Gymnodraco acuticeps: 117543361
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Entry
117543361 CDS
T09661
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu03030
DNA replication
gacu03410
Base excision repair
gacu03420
Nucleotide excision repair
gacu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117543361 (rfc1)
03410 Base excision repair
117543361 (rfc1)
03420 Nucleotide excision repair
117543361 (rfc1)
03430 Mismatch repair
117543361 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gacu03032
]
117543361 (rfc1)
03400 DNA repair and recombination proteins [BR:
gacu03400
]
117543361 (rfc1)
DNA replication proteins [BR:
gacu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
117543361 (rfc1)
DNA repair and recombination proteins [BR:
gacu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
117543361 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
RuvB_N
AAA_5
BRCT_2
AAA_16
AAA_33
RNA_helicase
AAA_17
AAA_14
nSTAND3
NTPase_1
AAA_7
AAA_18
AAA_19
Motif
Other DBs
NCBI-GeneID:
117543361
NCBI-ProteinID:
XP_034067452
UniProt:
A0A6P8UNL6
LinkDB
All DBs
Position
Unknown
AA seq
1180 aa
AA seq
DB search
MDIRRFFAPTAVQKPASNGNIKTEEEKKKKKKKNPLSSDEEVKNKKKETTKVKSSKTQEK
LKDGDKKRKNQIVIVSDSDDEEPVRKSKKSPKEKQKKSKSETPPKKDPVQYVSETDSDSD
SFQTLKKVSKTKPKQNGTAKQTKSDARPGAKEGLKSPVTPSSTKGKTAVKSPPTPITPKS
APPPAPKHTPTSVFDYFGSAAVQRSEKKLVASTKRKAPTQDTDDLSDEQIAKQLQMHEDM
ELEKQVHEDEEFARTLAMLDEEPQAKKARKGSDEKPAPTTLPKKSSPDSAAGSLSSPSKS
SRRGSMSEDAISPTPKKNPASVRASSKLATMKKEQEERDVSSKSKTIISPSKIKISPKKE
PLASPSYEKKFTPKTGTTVKTSPKKPEVSKSTSTSPDDAEKKKNTAAFRNFLNRDGPRAL
GSKEIPQGAENCLEGCVFVLTGVMESMERDDAKSLIERYGGKVTGNISKKTTYMVQGRDS
GVSKLEKAESLGTKILDEDGLLELISTKPGKKSKYEIAAEAENKASKTKTPPGRTSKSTP
TSQKISPSKGNSRSPHTPSPSKTGLASGRGAGTRGRDTPPGRGSAHTARRELGLSSSSAA
SPSEKGEDASLLWVDKYRPLSLKAVIGQQGDQSCANKLVRWLQNWYRHHGSGTSKPPVAR
FGKFGGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGLSFVEMNASCTRSKSSLKEVV
SESLNNTSIEGFYKGTSQKVTNKHVLIMDEVDGMAGNEDRGGIQEMISLIKTSKIPIIFM
CNDRNHMKIRSLANHCFDLRFQRPRVEQIKGAMMSLAFKEGIKIPPPALNEIILASNQDI
RQVIHNLSMWSAKDKVMTYDQCKTDAASARKDMKMGPFDVCRKVFVFGDETAHMSFIDKS
DLFFHDYSLAPLFVQENYLHVRPKAAGGDLKSHLMLLSKAADSISDGDLVDRRIRSGQNW
SLLPTQAVYASVLPGELMRGYMSQFPTFPSWLGKHSSTSKHSRIVQELSSHMGLKTMSSR
QAVNLDYLFYLRQALLSPLQRLGAEGAAQAVQLLDDYQLVREDVDSIMEISVWGGQPDPY
SKLESKVKAAFTRAYNKEVHLTPYSLQVVKKGRRGGGGAGESELGAKEMDNEAQESEDEG
VKLDAMIKQKKGKPIKKETKEKKEKKEASGKGKGKGKAKK
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccgactgcggtgcagaaaccagcttcaaatggaaac
atcaaaacagaggaggagaagaagaagaagaagaagaagaatcctctctcttcagacgag
gaagtgaaaaacaaaaagaaagagaccaccaaggtgaaaagctccaaaacacaggagaaa
ctcaaggatggtgacaaaaaacggaagaatcagatagtcatagtgtctgactccgacgac
gaggagccagtgagaaagtcaaagaaatcccccaaagagaaacagaagaagagcaaatca
gagacgcctcccaaaaaggaccctgtgcagtatgtctccgagacagactcagacagcgac
tcatttcagaccctgaagaaggtctccaaaactaaacccaagcagaacggcacggccaaa
cagacaaagtcagacgctcgccccggagccaaagagggactgaagtctcccgtcactccc
tcctccaccaaggggaaaactgcggtgaagtctcctcctacacccatcacccctaagtca
gccccgcctcctgcccccaaacacactcccacttcagtattcgactacttcggcagtgca
gctgtccaacgttcagagaagaagctcgtagcaagcaccaaacgaaaggcgccaactcag
gacacagatgatctgagtgatgagcaaatcgccaaacagctgcagatgcacgaggacatg
gagctggagaagcaggtccatgaggatgaggagtttgccagaactctggccatgctggat
gaggagcctcaagcgaagaaggctcgtaaaggctctgatgaaaaaccagcccctaccaca
ctacctaaaaagagcagtccggattctgctgcgggcagcctgagcagtccgtcaaagagc
agccgcagaggcagcatgtcggaggatgccattagtcccacccctaagaagaaccccgcc
tccgtcagagccagctccaaactggccacgatgaagaaagagcaagaagagagagatgta
tcgtcaaagagcaaaacaattatttcaccatcaaaaatcaaaatctcccccaaaaaggaa
cccctcgcttctccgagctacgagaagaagttcactcccaaaacaggaaccacggttaaa
acgtctcccaagaaaccagaggtgagcaagagcacgagtacgagtcctgacgacgcagag
aagaagaagaacacggcagctttcaggaacttcctcaacagggacggaccccgagctctg
ggctcaaaggaaatccctcagggtgctgagaactgtttggagggctgtgtgtttgtgctg
acgggggtcatggagtccatggagagggatgacgctaaatccctgatcgagcgctacgga
ggcaaggtgacgggcaacatcagcaagaagaccacctacatggtgcagggcagagacagc
ggagtctccaaactcgagaaggcggagagtctcgggaccaagatcctggatgaagatggt
ctgttggagctgatcagcaccaaacctggaaagaagtccaagtacgagatcgctgcagaa
gccgagaataaagcctcaaagaccaagaccccccccggcaggacttcaaagagcaccccc
acatctcagaagatctctccctctaagggtaactcccgctcccctcacaccccaagcccc
tcaaagaccggcctggcctcgggccgcggcgccgggacccgaggcagagacacccccccg
gggaggggctcggcccacacagcccggagggagctgggcctctcctcttcctcagcagcc
tccccctcagagaaaggggaggacgccagcctgctgtgggtggacaagtaccgcccactc
tctctgaaggctgtgattggccagcagggagatcagagctgtgccaacaagttggtccgc
tggttgcagaactggtaccgacaccacggcagcggcacctccaaaccaccagttgcaagg
ttcggtaagtttggaggcggcaaagatgacggatcaggattcaaagctgctctgctctct
ggacccccgggcgtggggaagaccaccacagcagccctggtctgtgaggagttgggcctc
agttttgtggagatgaacgccagctgcactcgcagcaaaagcagtttgaaggaagtcgtg
tccgagtcactcaacaacacgagcatcgagggcttctacaaaggcacatctcagaaagtg
accaataagcacgtcctgatcatggatgaggtcgatggcatggccggcaacgaggaccgc
ggaggaatccaggagatgatcagtctgatcaaaacgtcaaagattcccatcatcttcatg
tgcaacgatcgtaaccacatgaagatcaggtcgctggcaaaccactgcttcgacctgcgc
ttccagaggccccgagtggaacagatcaagggagccatgatgtcccttgctttcaaggag
ggaatcaagatcccccctccagctctgaatgagataatcctggcctccaatcaggatatc
cgacaggtgattcacaacctcagcatgtggtcggccaaagacaaggtgatgacgtacgat
cagtgcaagacggatgcagcgagcgcccgcaaggacatgaagatgggtccgtttgacgtc
tgcaggaaggtgttcgtcttcggggacgagaccgcccacatgagcttcatcgacaaatcc
gaccttttcttccacgactactcgctagcgccgctcttcgtccaggagaactacctgcac
gttcggccaaaggctgcgggtggggacctgaagtcccacctgatgctgctcagcaaggcg
gccgactccatctctgacggagacctggtggaccgacggatccgctcggggcagaactgg
tccctgctgcccacccaggctgtctatgccagtgtgttacctggcgagctcatgaggggc
tacatgagtcagttccccaccttccccagctggctcggcaagcactcctccaccagcaag
cactctcgcatcgtgcaggagctttcctcacacatgggattaaagacgatgagcagccgg
caggcggtgaacctggactacctgttctacctgcgccaggcgctgctcagcccgctgcag
aggctcggagcggagggcgccgcccaggctgtgcagctgctggacgactaccagctggtc
agggaggacgtggacagcatcatggagatcagcgtgtggggggggcagccagacccctac
tctaaactagagtcaaaggtgaaggcagcgttcacccgggcctacaacaaggaggtccac
ctgacgccgtactctctgcaggtcgtgaagaagggccgccgcgggggtgggggtgcgggg
gagtcggagctgggagcgaaggagatggacaatgaagcgcaggagtctgaggacgagggc
gtcaagttggacgccatgatcaaacagaagaagggcaaacctatcaagaaggagacgaag
gagaagaaggagaagaaggaggcttctgggaaggggaaaggcaaaggaaaggccaaaaaa
tga
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