Gymnodraco acuticeps: 117543491
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Entry
117543491 CDS
T09661
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu03013
Nucleocytoplasmic transport
gacu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117543491 (upf3b)
03015 mRNA surveillance pathway
117543491 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gacu03019
]
117543491 (upf3b)
Messenger RNA biogenesis [BR:
gacu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117543491 (upf3b)
mRNA cycle factors
P-body specific factors
117543491 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
117543491
NCBI-ProteinID:
XP_034067729
UniProt:
A0A6P8TU19
LinkDB
All DBs
Position
Unknown
AA seq
459 aa
AA seq
DB search
MKEDKENARPKDRRLELNCEDGEKTERSKEKKEAMTKIVIRRLPPSLTKEELEEQLQPLP
EMDYLEFFSSDTSLSPHLFARAYINFKHQEDIVLFRDRFDGYVFIDSRGQEYTAVVEFAP
FQKTAKKRSKKKDAKCGTIDEDPDYNKFLEIYNGDDDKMASTPETLLEEIEAKSKELVAK
KTTPLLDFLKNKQRIREEKKEERRRRELERKRVRDEERRKWREEERRKRKDTDKMKRLDK
PLEKDKDQVKEEPKIKLLKKPDRAEDADSEKPKEKTKKPERPNKEDRPMGGADHKRRQHI
DNKEDRGRKGEEDGRKEFRERDPDRDRERDGEREKERRQREKERLRRQDEDRRRRREREN
TFRKEKRQDEAKKDKERAFEKKKGDHTGESSRSERSERPAKDHKKEESLKRDRLRNKDRP
TIQLYQPGSRTRTRGGAESSSADRKPDTETEKVADKGDD
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagataaggaaaacgctagaccgaaggatagaagactggaattaaattgtgaa
gatggagaaaagacggagaggtccaaggaaaagaaagaggccatgacaaagattgtgatc
agacggttaccaccaagtctgaccaaggaggagctggaggagcagttacaacctctccca
gagatggactacctggagtttttctccagcgacaccagcctttccccacatctctttgca
agggcttacataaacttcaagcaccaagaggatatagttctcttcagagatcgatttgat
ggttatgtgttcattgacagcagaggacaggagtatactgccgtcgtggaatttgcccct
tttcaaaagactgccaagaaaagaagtaagaaaaaggacgcaaaatgtggaacaattgat
gaagatcctgattacaataagtttcttgaaatttacaacggcgatgacgacaagatggca
tcaacacctgagaccctgctggaagagattgaggccaaatcaaaggaactggttgctaaa
aaaacaactcctctgctggacttcctgaagaataaacagagaatcagggaggaaaagaaa
gaagagagaagaaggagggagcttgaacgcaagcgtgtgcgtgatgaggagcgtcgcaag
tggagggaggaggagagaaggaagcgcaaagacaccgataagatgaagagactcgacaaa
ccgctggagaaagacaaggaccaagtgaaagaagaaccaaagattaagctcctgaagaag
ccagacagagctgaagatgctgattctgagaagcccaaggaaaaaaccaagaaaccagag
aggcccaataaagaggacagacccatggggggtgctgatcataagaggcgtcagcacatc
gataataaggaggatcgaggaaggaaaggtgaggaagacgggaggaaggagttcagggag
cgcgacccagaccgagacagagagcgcgatggagagcgggaaaaggagcgccgccagagg
gagaaggagcgcctcaggcgacaggacgaagaccgccggagaaggagagagcgcgagaac
actttcaggaaggagaaaaggcaggatgaggctaaaaaggataaagagcgggcctttgag
aagaagaagggagatcacactggagagtccagtcgctctgagaggtcagagaggcctgcc
aaagaccacaagaaggaggagagcctgaaaagagatcggcttcgaaacaaggaccggcct
accattcagctgtaccagcccgggtccagaacccgcactcgaggaggagccgaatccagc
tctgccgacaggaagccagacaccgagacggagaaagtggctgacaaaggagacgattga
DBGET
integrated database retrieval system
