Gymnodraco acuticeps: 117546028
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Entry
117546028 CDS
T09661
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu04510
Focal adhesion
gacu04512
ECM-receptor interaction
gacu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117546028
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117546028
09142 Cell motility
04820 Cytoskeleton in muscle cells
117546028
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gacu04147
]
117546028
00536 Glycosaminoglycan binding proteins [BR:
gacu00536
]
117546028
Exosome [BR:
gacu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117546028
Glycosaminoglycan binding proteins [BR:
gacu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117546028
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117546028
NCBI-ProteinID:
XP_034072000
UniProt:
A0A6P8UJB2
LinkDB
All DBs
Position
Unknown
AA seq
1682 aa
AA seq
DB search
MNKDLKSLSQLAVPLLLFALCVAVQRTESAACHGCVGSKCDCSGVKGTKGERGFPGLTGQ
PGVPGFPGPEGPIGGRGEKGTDGSQGLYGPKGIRGPSGLPGFPGTPGLPGLPGQDGPPGP
RGIAGCNGTKGDRGFPGIGGILGQQGQPGVPGLPGIKGDPGDVISTNRFGEKGSVGLPGL
PGVPGSSGPPGSQGPLGPQGHRGPDGRSGPPGSPGPKGNMGLNFQGPKGEKGEPGLAGPA
GPPGQVGEQKRPPETEIQRGDKGDPGLQGLQGDPGYPGVPGPSGGQKGGKGEAGDAGKRG
KNGKDGDPGGPGFPGGKGDSGQPGPPGRDGETGFKGDRGYPGPPGVVIGSQTGGQVGPKG
EAGYPGSPGYKGERGPGGLSGPPGAPGLSATGGGGVSGPPGFQGEKGLKGDSGVPGLSLP
GPPGRTGSNGGQGAPGLPGPPGFSSGQQNCVAGESGRPGVQGERGFPGGSGQKGDKGETC
VNCFGGTSGIQGPQGPAGQPGFPGTPGGPGVKGDRGYPGSPGSSGPAGPSGSQGSPGFPG
PKGDPGDAVTVSGGRGEKGDSGFPGSPGLPGLDGRPGRDGQPGNSGAKGTPGSLLVKGER
GPPGDSGPSGNPGDRGPGGAPGFGPQGSTGDKGVQGVSGRSGGPGAPGTKGEPGLAIAEK
GSSGSPGLDGSSGSPGSPGNPGGPGQNGFPGLPGMKGDPGLPGIGLPGPPGVKGFPGIPG
QNGPSAGPGRPGVDGLPGQPGFPGSKGEPGFGLPGPPGLPGVPGSKGFIGVKGDPGFSGG
PGSPGRSGSDGGPGSKGDPGTSGIPGARGPPGSPTTGSLGQPGPPGPSGPMGSPGFPGSN
GGKGDPGPPGLDIPGLPGERGGNGFPGSPGQVGTPGPLGGPGRDGLPGLPGQKGDMGSMG
TPGPSGGPGGPGGPGGPGFKGEPGFSGRDGSPGGPGGKGDRGDPGVTGPPGASLPPSVTK
GTKGDPGLPGGPGFSGQKGVPGLSGDPGLSGSDGRPGLPGPPGPKGDSGIPGGPGGSGGP
GGKGSMGEMGFPGPSGQKGLSGQPGRSGGPGQPGGSGFPGSKGEPGSAGVGPPGPGGLKG
ETGQPGFPGNSGLKGTPGSSGQPGGPGGPGSKGDPGLPGFQGSPGIPGPKGLDGGSGGPG
LTGAPGRPGESGRSGGPGQPGDKGQAGRDGIPGPAGVKGDPGLPGYGGPGASGLPGLPGS
KGDSGGPGPSGTPGFPGSKGDAGFPGNPGPSGNSGPSGSPGLALQGPKGLSGSPGPPGRA
GQGGPQGPRGPPGSGGIKGDRGIPGALGQPGFGGQKGESGGPGFPGTSGLNGGSGLKGDI
GLPGVPGFPGSKGDSGLPGGSGLNGDPGDAGGPGPPGDPGLSPTPIVVKGERGPPGPSGL
PGGRGTPGSPGREGLTGQPGGPGDSGPDGPPGFSGPNGRKGDTGPAGSPGTRGIPGPTGS
DGPQGLPGPPGSGSAAHGFLITRHSQGQEVPFCPEGTSPIYDGYSLLYVQGNERAHGQDL
GSAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPSSMAPITGEGIKPFISR
CSVCEAPAMVIAVHSQTIQIPACPSNWEALWIGYSFMMHTSAGAEGSGQALASPGSCLEE
FRSAPFIECHGRGTCNYYGNSYSFWLATVEPSEMFRKPQSETLKAGNLRTRVSRCVVCMK
RT
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagacttgaagagcctgagccagctcgccgtgcctctgctgcttttcgccctg
tgcgtcgcggtgcagcgaacagagtcagcggcttgccatggctgtgtgggatccaaatgt
gactgcagtggagtaaaaggaaccaagggtgaacggggtttcccgggtctcaccggacag
ccaggggttccaggtttccccggacctgaggggccaatcggaggcagaggagagaagggt
accgatggatctcaggggctttatggtccaaaaggaataagagggccatctggattgcca
ggattcccaggaacgccaggacttcccggtctgcccggccaggatggacctccagggccg
agaggaattgcgggctgcaacgggacaaagggtgacagggggttcccaggaattggagga
atcctcggtcagcagggacagccgggtgtacctggtctgccaggaataaagggcgaccca
ggtgatgtgatctccaccaatcgttttggagagaaaggttcagtgggactgcccggacta
ccaggagttcctggaagttctggaccacccggttcgcaaggcccactcggcccacaagga
cacagaggtcctgacggtcgttcaggtcctcccggcagtcccggaccaaagggaaacatg
ggattgaacttccaaggccccaaaggagagaagggtgaaccaggtctagcaggccctgct
ggtcctccgggacaagtgggagaacagaagagacccccagagacggagatccagagagga
gataagggagaccccggtcttcaaggtcttcaaggtgatccaggatatccaggagtccct
ggtccctcaggaggccagaaaggaggcaagggagaagcaggagatgcaggcaaacgaggc
aaaaacggcaaagatggcgaccccggtggtccaggcttccccggaggtaaaggagactca
ggccagccaggtcctccaggaagggatggggagacgggtttcaaaggtgatcgtggatac
ccaggcccaccaggcgtggtgatcggctcgcagacgggggggcaggtcggccctaaaggt
gaggccggctaccccggatcacctggatacaaaggagagagaggaccaggaggtttatcg
ggccctccaggagccccaggactctcagctactgggggtggaggcgtctcaggacctcca
ggcttccagggagagaaaggtttgaagggagattctggcgttcccggtctttctctgccg
ggacccccaggacgaacagggtccaacgggggtcagggagctccaggactccccggacct
ccaggattctcctcgggtcaacaaaactgcgttgccggagagtccggacgcccaggagtc
cagggagagagagggttccccggagggtctggacagaaaggtgataagggcgagacgtgt
gtgaactgctttggaggtacctccggcatccaaggaccccaaggacctgccggacaacca
ggattccccggaactcccggaggtccaggagtcaaaggagaccgaggatacccaggatct
ccaggctcctctggacccgctggtccctccggttctcagggttctccaggtttccccgga
ccgaagggagaccccggagatgccgtcacggtgagcggtgggcggggagagaagggagac
agcggattccccggatctcccggtcttcccggtttggacggtcgacccggtcgcgatgga
caacccggaaactcaggagccaaaggaactccgggttccctgctggtgaaaggagagcga
ggaccccctggtgactcaggtccctctggtaacccaggagacagaggtcctggcggggcc
ccgggcttcggacctcaagggtctacaggagacaaaggtgtccaaggagtctccggaaga
tctggagggcccggtgcccccggtactaaaggtgaacccggtctagcaattgcagagaaa
ggatcatcagggtcaccaggactggacggctcttcaggatcgcccggatcaccaggtaac
cccggtgggcccggacagaacggtttcccgggattaccgggaatgaagggagaccccgga
cttcctggcatcggactcccaggacccccaggagtaaaaggattcccaggtattcccggt
cagaacggaccttcagcaggaccaggaagacccggagtggacggacttcctggtcagcct
ggattccctggatctaagggtgagcctggttttggtctacccggcccccccggtctccca
ggagtccctggatctaaaggcttcatcggagtaaagggagaccccggcttctctggaggc
cccggctctcctggaagatctggatctgatggcggtcctggatccaaaggtgaccctgga
acatctggaatacctggagctcgcggcccacctggatcccccaccacgggctctctgggg
cagcctggcccccccggaccctccggaccaatgggatcaccaggattccccggatcaaac
ggagggaagggagaccccggacctccaggtctggatatccccggtctgccaggagagaga
ggaggaaacggtttcccaggatccccgggacaagtgggaaccccgggaccccttggaggg
ccaggacgcgacggcctgcccggactgccaggtcagaaaggagacatgggctccatggga
actccaggaccctcagggggaccaggaggccccggaggacccggcggacccggatttaaa
ggtgaaccaggattctcaggaagagacggatctcccggcggtcccggaggaaaaggagac
agaggagaccccggcgttacgggacctccaggagctagtctgcccccgtccgtcacaaag
ggaaccaaaggagaccctggactaccaggtggaccaggtttttccggtcagaaaggtgtc
cccggtctgtcaggtgaccccggtctctcaggatcagacggtcgccctggactccccgga
ccaccaggtccaaagggagattctggcatcccaggaggccccggtggttctggaggtcct
ggaggaaagggcagcatgggagaaatgggattcccaggaccatcaggacagaagggtctg
tcaggtcagccaggtagatcaggaggtccaggacaacccggaggatctggtttccccgga
tctaaaggtgaacccggatctgctggagtcggaccccccggacccggaggacttaagggt
gaaacaggtcagccaggcttcccaggaaattcaggacttaaaggaactccaggatcttca
ggtcaaccaggaggaccaggaggaccaggatccaaaggagaccccggactgccaggattc
caaggttcccccggtattcccggtcctaagggtctggacggcggttccggtggtcctggt
ctcactggagctccaggtagaccaggagagtctggaagatcaggaggtccaggacaaccc
ggagacaagggtcaggcgggtcgggacgggatcccaggaccagctggagtcaaaggagac
ccaggtcttccaggttacggtggacccggcgcttccggacttccaggattgcccggctca
aagggagactccggtggtcctggcccatctggcactcctggttttcccggatctaaggga
gatgctggttttcccggaaaccctggtccctcaggcaacagtggcccttcagggtctcca
ggtctagctctgcagggccccaaaggactctcaggatcccctggaccccccggaagagca
ggtcaaggtgggccccagggtcctcgtggtcccccaggaagtggcggcattaagggagat
aggggtattcccggcgctcttggtcagccaggctttggaggacagaagggagagagtggt
ggtcccggattcccaggtacatctggtcttaacggcggctctggtttgaagggagatatc
ggtcttcccggcgttcctggtttccctggatcaaagggagattctggacttcctggcggc
agcggcctcaacggagatcctggagatgccggaggccccggccctcctggtgaccccggt
ctttctcccactcccatcgtggtgaagggagagcgcggaccccccggaccctcaggcctg
cctggaggtcgaggaacacctggttcacctgggcgtgagggacttacaggtcagcctggt
ggccccggagattctggtcctgatgggcctcctggcttcagcggacccaacggcaggaag
ggagacacgggccccgccggcagccccggcacgcgtggtatccccggccccactggttct
gacggtcctcagggtctccccggtcctccaggatcagggtctgcagcccacggcttcctg
atcactcgtcacagtcagggacaggaagtgccgttctgccccgagggaaccagccccatc
tacgacggatactctctgctctacgtgcagggcaacgagcgcgcgcacggacaggacctc
ggttcggccggcagttgtctgcgccgcttcagcaccatgcccttcatgttctgcaacatc
aacaacgtttgtaacttcgcctcccgcaacgactactcctattggttgtccacacccgaa
cccatgcccagctccatggcccccatcaccggggaggggatcaagcctttcatcagcagg
tgttcggtttgtgaagctccagccatggtgatcgcagtgcacagtcaaaccatccagatc
cccgcctgcccctcaaactgggaggctctgtggatcggatactccttcatgatgcacacc
agtgccggtgcagagggttcgggtcaggctctggcctcccccggctcctgtctggaagag
tttcgcagcgctcccttcatcgagtgccacggcagaggaacatgcaactactacgggaac
tcctacagcttctggctggccacggtggaaccctccgagatgttcaggaagccccagtct
gagactctgaaggcgggtaacctgcggactcgtgtgagccgctgcgtggtctgcatgaag
aggacgtaa
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integrated database retrieval system
