Gymnodraco acuticeps: 117546928
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Entry
117546928 CDS
T09661
Symbol
ddx3xb
Name
(RefSeq) DEAD-box helicase 3 X-linked b isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
117546928 (ddx3xb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gacu03019
]
117546928 (ddx3xb)
03041 Spliceosome [BR:
gacu03041
]
117546928 (ddx3xb)
03036 Chromosome and associated proteins [BR:
gacu03036
]
117546928 (ddx3xb)
Enzymes [BR:
gacu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117546928 (ddx3xb)
Messenger RNA biogenesis [BR:
gacu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117546928 (ddx3xb)
mRNA cycle factors
Common to processing body (P body) and stress granule
117546928 (ddx3xb)
Spliceosome [BR:
gacu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117546928 (ddx3xb)
Chromosome and associated proteins [BR:
gacu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117546928 (ddx3xb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
117546928
NCBI-ProteinID:
XP_034073233
UniProt:
A0A6P8U8U8
LinkDB
All DBs
Position
Unknown
AA seq
752 aa
AA seq
DB search
MSHVAVENVHGLEQQLAVLDLSGADGQGGGPNRNAFAAQRPGGYTIAPPATYGWDAGRNN
FVNGYHDNRMAGANTFQHRGPPRMERGRGGIGGGYRGNRGGAFNPIIPAVQPMAFAGYEN
KVFLPDAGGWNTPKETYGNFGNNRGKSAFFNHTGNANRGRFDHGGFSGGGGGGGGGGGGG
GGGGGGGGSGGGGGGGNNRWVEEPREDGDWAKPTARNERLESELFSGGNTGINFEKYDDI
PVEATGQNCPHHIESFQDVDMGEIVMANIALCRYTRPTPVQKYAIPIVKSKRDCMACAQT
GSGKTAAFLLPILSQIFSEGPGEALNAAKASGQDNGKYGRRKHFPMSLILAPTRELALQI
YDEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHMLVATPGRLVDMMERGKIGLDYCN
YLVLDEADRMLDMGFEPQIRRIVEQDTMPHKGIRQTMMFSATFPKEIQILARDFLEEYIF
LAVGRVGSTSENITQKVVWVEESDKRSFLLDLLSATVIPSEVQDNTGDNIEKPGKDSLTL
VFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALSQFRSGKCPILVATAVAARGL
DISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQ
EVPSWLESLAYEHQHKTNTRGRSKRFSGGFGARDYRQTAAGGTAGGFGGRGGRNQAGHGG
NRGFGGAGFGNFYTSDGYGGNYSHPQVDWWGN
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatgtccacggtctagagcagcagctggctgtcctagac
ttgagtggggcagacggacaaggtggaggccctaaccgaaatgccttcgctgcccagcgg
ccggggggatacaccatagcgccgccagcaacatatggctgggatgcgggtcgcaacaac
tttgtgaacggctaccatgacaaccgcatggctggcgcaaacacatttcaacaccgaggt
ccgcctcgcatggagcggggccgcggtggcatcggagggggttaccgtggcaacaggggc
ggagccttcaaccccatcatccccgcggtgcaaccaatggcgttcgccggctacgaaaac
aaagtctttctgccagatgcaggtggctggaacacgcccaaggaaacttacggcaatttt
ggcaacaaccgagggaagtctgccttcttcaatcacacaggaaacgccaacagaggaagg
tttgatcacggtggattcagtggtggtggaggaggtggtggaggcggaggaggtggagga
ggaggtggaggaggaggtggaggaagtggtggtggaggaggaggaggaaacaaccgctgg
gtggaggagcccagagaggatggagactgggccaaaccaacggcacgaaacgaacgcctg
gaaagtgagttgttctccggcggtaacactgggatcaactttgaaaaatacgatgacatt
cctgttgaggccacgggacagaactgccctcaccacatcgagagtttccaggatgtggac
atgggggagatcgtcatggcgaacatcgctctctgtcgctacaccagacccacacctgtc
cagaaatatgccattcctattgtcaagtcgaagcgggactgcatggcctgcgctcagaca
ggttctggaaaaactgcagctttcctgctgccgattctcagccagatcttcagcgaagga
ccaggagaagctctgaacgcagctaaagcatctggacaggacaatggaaagtatggccgt
cgtaagcacttccccatgtcactgattttggctccgaccagagaactggctctgcagata
tacgacgaagccaggaagttctcctaccgctcgagagtgcgtccctgtgttgtgtacgga
ggcgcggacattggtcagcagatcagagatctggagcgaggctgtcacatgctggtcgct
acgcctggtcgactggtggatatgatggagagaggcaagatcggactggactactgcaac
tacctggtcctggacgaggcagatcgtatgttggacatgggattcgaaccccagatcaga
cgcatcgttgagcaggacaccatgccgcacaaaggcatccgacaaaccatgatgttcagc
gccaccttccctaaagagatccagatccttgccagagacttcctggaggagtacatcttc
ctggcggtgggccgagtgggctccacctcggagaacatcacccagaaagtagtgtgggtg
gaggagagcgacaagaggtctttcctcctggatctgctcagcgctacagtcatccccagc
gaggtacaggacaatactggagacaacatagagaaacctggtaaggactcgttgaccctg
gtgttcgtggagaccaagaaaggtgccgacgctctggaggacttcctgtatcgggagggg
tacgcctgcaccagtatccatggcgaccgttcccagagggaccgagaggaggcgctgagt
cagttcagatctggaaaatgccccatcctggtggccacagcggtggcagctcgtggtctg
gacatctccaatgtgaaacatgtgattaactttgatctgcccagcgacatcgaggagtac
gttcaccgtatcggacgtacaggacgagtgggaaacctcggattggccacatcgttcttc
aatgataaaaatgggaacatcaccaaggacctgctggacatcctggtggaggcgaaacag
gaagtgccctcatggctggagagcctggcgtatgaacatcagcacaagaccaacaccaga
ggacgctctaagaggttctccggtggttttggagctcgtgattaccgtcagacggcagcc
ggaggcaccgccggagggtttggaggacgtggaggacgcaaccaggccggacacggagga
aaccgcgggttcggaggagctggttttggaaacttctacacgagtgatggctacggagga
aactactcgcaccctcaagtggactggtggggcaactag
DBGET
integrated database retrieval system
