Gymnodraco acuticeps: 117547728
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Entry
117547728 CDS
T09661
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
gacu
Gymnodraco acuticeps
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
VWA_2
Motif
Other DBs
NCBI-GeneID:
117547728
NCBI-ProteinID:
XP_034074410
UniProt:
A0A6P8UQH0
LinkDB
All DBs
Position
Unknown
AA seq
1584 aa
AA seq
DB search
MSPHLHAPSSSLWLMLCFLLSVFLLLSPGVYGQGRLKLTVLSEDRLQMKWKEADGPVQGY
KVRVKPISEVPQPELMLTTTRGRATVAGLDSSQEYALQVLVLNGTTERLLAKRRFTMEGL
RDEEMIRSGSREQKKKMLPGGSGSGDLDDVTEALIGRPTVLYPDPTNNPAAAAPTTEPPA
IETPSQLPDEAPENTPKEKRKRKNGKERDRSKGENKEEQGTTQGKAAKEKPRKTPTPTQP
VTGMSPRKPFECETDAAADIVLLVDGSWSIGRTNFRRVRDFLEGLMTPFNIGPDHIQIGL
TQYSGDPRTEWHLNNFTTKEQLLEAVRNFRYKGGNTFTGQALLHVMEENMRPEAGARSAT
PFFLVLLTDGKSQDDAIAAADRLKNAGVEIIAVGVKNADEAELRQVASEPVDLNVYNVND
FPLLSKLVSRLVHILCGRIEDRGISKRMEPGPTVDPALSYPSPSDLRFSQLGSREVQLHW
TNPAEAVQQFRVVYHSSEGQSPQEVVLGGSESTVLLEGLSSQTLYHVSIFPVYENNVGLA
LRGTVTTLPLATPADLEVTPSSYSTLQVSWGAAPRATQYMILYSALSHGEPDDAKEEKFS
AEQTVVELTGLLPATDYSVTLYALYEDDPSDPVTAVAATFPLPPPMSVEFPMVTHSMLKV
SWVPGAGDVPSHRITYSTNHGSDIKQVEVTGLNSVVVQNLSSLSRYLVSVQSNYPQGLSA
ALTSNVTTLKVPSPSDLRVTNFSDSDITVRWQAGADDVVSYLIKWISLSGGDLRQLRVSG
ESEGAILEGVEEDKEYQISLSALYGDGAQSEAVAIRYSTLSGGGPSSISVTEERAVSMVV
SWVPPNAHVLQYRVTYTALTAPESQDSTMLVPGDEKRVVLKLLQPDTRYSILVTAEYRNR
EGGSGSAQGKTTSLRVSSVSVVRSDQSSICVSWRPVSAVDGYRIVIQSVKDKQTKEEAVA
ESSSSHCFTDLEPETLYRISVHSLLGSAEGAAVSILHPTATAPARLPIHRRMYPIHNEVC
PEVTIRNSIVKGFDMMEAFGLTRTAHSSVEGVAAEPFVFNTLPAYTVFRDIQLTQNTKFI
HPAGLSPEHTISIAFRVLQETPREPFALWQLTDNDFQPKMGLVLDPTTKHLVYFSLDYRG
EVQELTFDQRQVHRLFYGSFHKIHLTVSQVSVSLSVDCQRVGERPARPLGSLPTDGFEML
GKLVKTRGPKSGSAPFQLQSFEIVCNTTWAFEDTCCDLPAMRDEESCPAPAYTCTCSSDV
PGAPGSPGPTGKPGTRGEKGEKGDPGHKGEVGPAGKPGFEGGLGALGSIGPRGIAVQGKM
GPPGARGGKGDPGRTGIQGLPGPQGSKGEQGVPGPLGIRGLEGNMGGPGLTGPRGFQGRP
GHPGPMGERGLSGLVGPSGLPGGKGERGEKGEAQSMAMIFQLVTQACEQLVHKEVLKLDM
FINEMNRKPAPIEEPVGPPGEPGIPGPKGPPGGRGNQGNVGSRGRPGRPGYPGEQGGRGM
LGAKGDAGPNVQGPTGIKGFAGPLGEAKLGDPGSKGDDGKSGPQGISGTPGQPGEMGPPG
LCDNSGGCNRAPQQTEDPYYGYQP
NT seq
4755 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctcacctccatgctccatcatcatctctctggctcatgctgtgtttcctgctc
agtgtcttcctgctgctgtccccaggggtctatggccaaggtcgtcttaagctgacggtc
ctgtctgaggacagactgcagatgaaatggaaggaggccgacggacctgttcagggctac
aaagtcagagtgaaacccatctcagaggtgccacagccggagctgatgctgaccaccaca
cggggccgggccacggtggcaggactggactccagtcaggaatacgccctccaagtcctc
gtgctcaatgggacgacggagaggcttctcgcaaagcgcagattcacgatggagggtctg
cgggatgaggaaatgatccgcagcggtagtcgagaacagaagaagaagatgttgccaggc
gggtcggggtctggagacctggacgatgtgacggaggctcttattgggcggccaacagtt
ctgtatccggaccccaccaacaaccccgctgctgctgctccgactacagagcccccagca
atagaaaccccctctcagctccccgatgaggcgccagagaatacccccaaagagaagagg
aagagaaagaatggaaaagagcgggatcgttccaagggggagaataaggaggagcagggg
acgacacagggcaaagcagcgaaggagaaaccccggaaaacacccacccctacccaacca
gtgacagggatgtctccaaggaaaccatttgagtgtgagaccgatgcagctgcggacatt
gtgttgttggtggacggctcctggagtatcgggcgtaccaacttcagacgggttcgagac
ttcttggagggcctgatgacacccttcaacatcgggccggaccacatccagatcggtctg
acccagtacagcggagacccccgcacagagtggcatctcaacaatttcactaccaaagag
cagcttttggaggcagtgaggaatttcagatataagggtggaaacacatttacaggtcag
gcgctgctccatgtcatggaggagaacatgaggccagaggcaggcgcaaggtcagctaca
ccttttttcctggtcttgttgaccgatggtaaatctcaggatgatgccattgctgcggca
gaccgcctgaagaatgccggcgtggagatcatcgctgtaggtgtaaaaaatgcggatgag
gccgagttgagacaagtagcgtcggagcccgtggatctgaacgtctacaatgtcaatgac
ttcccgctgctcagcaaactagtgtcacgattggtccacatcctgtgtgggaggatagag
gaccgcggcatctcaaaacgaatggagcctgggcccacagtagacccagccctctcctac
ccaagtccttctgatctccgcttctctcagctgggctccagagaagtgcagcttcactgg
accaatcctgctgaagctgtccaacagttcagagtggtctaccacagctctgaaggccag
agtccacaggaggtggtgttgggcggctcagagtccacagtgctgctggaaggcctctcc
tctcagacactgtaccatgtgtctatcttccctgtgtatgaaaacaatgttggcctggcc
ctcagaggaaccgtcaccacattgcccctggccacacctgccgacctggaggtgactcct
tcctcttacagcaccctgcaggtgagctggggtgcagcgcccagggccacacagtacatg
atcctgtactctgcactcagccacggagagcctgacgacgccaaggaggaaaaattcagt
gcagagcagacggtggtggagctgacggggctactcccggccacagactactctgtcact
ctttacgctctgtacgaggacgatcccagcgatcctgtcactgctgttgccgccacattc
cccctcccaccaccaatgagtgttgagttcccgatggtcacccacagtatgctgaaggtg
agctgggtgcctggagcaggggacgtccccagccacagaatcacatacagcaccaaccac
ggcagtgacattaagcaggtggaggtaacaggactgaactcagtggtggtgcagaacctc
tcctctctgtccagatatctggtttcagtccagtctaactacccacaaggcctgtctgca
gcactcaccagtaacgtcaccacactgaaggtgccttccccatcagacctcagggtgact
aatttctccgacagtgacatcactgtgcgctggcaggctggggctgatgatgtcgtctct
tacctcatcaagtggatctccctcagtggaggagacctgagacagctgagggtgagtggt
gagagtgaaggggcgatcctggagggggtggaggaagataaggaataccaaatctctctg
tctgcactctatggagatggagctcagagtgaagcagtggccatacgctacagcacattg
tctggtggaggtccatccagcatctcagtgaccgaggagagagcagtcagcatggtggtg
agctgggtgcctcccaacgctcacgtcctgcagtaccgtgtaacttacaccgcactgact
gcacctgagagccaggacagcactatgttggtcccaggtgatgagaaacgggtggtgctc
aagttgttacagccagacacacgttacagcatcctggtcaccgcagagtaccgcaacaga
gaaggaggcagcggctcagctcagggcaaaaccaccagtctgcgggtcagcagtgtgagt
gtggtgcgctcagaccagtccagtatctgtgtgtcctggagacctgtgtctgctgtggat
ggataccgtattgtcatccagtcagtcaaagacaagcaaacaaaggaggaggctgtggca
gagtccagcagcagtcactgcttcactgatctggaaccagagactctgtatcgcatcagc
gtgcactcactgctcggctcagcagagggcgctgccgtctccatcctccacccaacagcc
acagctcctgccagacttcccatccaccgccggatgtaccccatacacaacgaagtctgc
cctgaagtcaccatcagaaacagcattgttaaaggattcgacatgatggaagccttcggt
ctgactcggacagctcactcctctgtggagggtgtagctgccgagccttttgtcttcaac
accctccccgcctacactgtgttcagagacatccagctgacacagaacaccaagtttatc
caccctgcaggtttgtctccagaacacaccatcagcatcgccttccgcgtgctgcaggaa
actcccagagagcccttcgccctctggcagctcactgacaacgacttccagcccaagatg
ggattggtgctcgaccctacaactaagcacctggtgtacttcagcctggactacagggga
gaggtgcaggagctgacctttgaccagcggcaggtccacagactgttctatggcagtttt
cacaagatccacctgactgtcagccaggtgagcgtgtccctgtctgtggactgtcagcgt
gtgggggagaggccggcccgccctctaggcagcctgcccaccgacggctttgagatgctg
ggaaaactggtgaagacccgaggacccaaaagtggctctgctccgttccagctgcaatcc
tttgagatcgtctgtaacaccacgtgggctttcgaggacacctgctgtgacctgcctgca
atgagagatgaggagagctgtccggccccggcgtacacctgtacctgttcctctgacgtc
cccggagcccccggctcccccggaccaactggaaagccaggtactcgtggtgagaaaggt
gaaaagggcgacccaggtcacaagggggaggtgggtcctgcaggaaagcctggatttgag
ggaggtctcggagccctggggagcatagggccccgaggcattgctgtgcagggcaaaatg
ggtccacctggtgcaagagggggaaagggagaccctgggagaacagggatccagggttta
ccaggacctcaaggttcaaagggggagcagggggttcccggccctctgggtattcggggg
cttgaaggaaacatgggtggacccggcctgactggaccaaggggtttccaaggaaggcca
ggacacccagggccgatgggtgaaagggggctctcaggactggtgggcccttcgggtctg
ccagggggtaaaggggagcgaggagagaagggagaagctcagtctatggccatgatcttc
caactggtcacacaggcctgtgagcagctagtgcataaggaggtgctgaagctcgacatg
ttcattaatgagatgaatcggaagccagctccaattgaggagccggtggggccccccggg
gaacctggtataccggggcctaagggcccaccaggcggcaggggcaaccaggggaatgtc
ggctcgagggggagacctgggaggccaggatatcccggagagcagggaggaagaggcatg
ctaggggccaagggggatgcagggccaaatgtccaggggcccacggggatcaaaggattt
gcaggtcctctgggtgaggctaagctgggtgacccaggttctaaaggagatgatggtaaa
tcaggaccccaggggatcagcggaacaccaggacagcccggagagatgggacccccgggt
ctgtgcgacaacagcggaggctgcaacagagccccccagcaaacagaagacccctattac
ggctaccaaccttga
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integrated database retrieval system
