Gymnodraco acuticeps: 117548772
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Entry
117548772 CDS
T09661
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117548772 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gacu03041
]
117548772 (ddx42)
Enzymes [BR:
gacu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117548772 (ddx42)
Spliceosome [BR:
gacu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117548772 (ddx42)
Complex B
117548772 (ddx42)
Complex C
U2 SnRNP specific factors
117548772 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
117548772
NCBI-ProteinID:
XP_034076124
UniProt:
A0A6P8UG89
LinkDB
All DBs
Position
Unknown
AA seq
974 aa
AA seq
DB search
MFLAALRRRRTLTATETWRALMTQDSSMSSENTGRFTGSRNSSAMNWNKGGPGVKRGFGF
GGFSLAGKKDEPSPPPKSQTNFAPPGSSGYGKSQQLPSFYKIGTKRANFDEENAYFDDDE
EESSNNVDLPYIPAENSPTRLQMQTGGGSDSEDDPLDAFMAEVESQAAKDMRKLEEKEKE
KKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTLEDEDENIDYDSDGNPIAPTTKKIILP
LPPIDHSEIDYPPFEKNFYNEHEELSCLTATQVFDLRHKLNLRVSGAVPPKPCTSFAHFS
FDEQLMHQIRKSEYTQPTPIQCQGLPIALSGRDMIGIAKTGSGKTAAFIWPMLVHIMDQK
ELEAGEGPIAIIVCPTRELCQQIHAECKRFGKAYSLRSVAVYGGGSMWEQAKALQEGAEI
VVCTPGRLIDHVKKKATSLQRVSYMVFDEADRMFDMGFEYQVRSVASHVRPDRQTLLFSA
TFRKKIERLARDILVDPIRVVQGDIGEANEDVTQIVEMLPTAADKWDWLTRRLVEFTSSG
SVLIFVTKKANCDELAANLTQEGHSLGLLHGDMDQSERNKVISDFKKQNLPVLVATDVAA
RGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTNKDTTFAGDLVRNLEG
ANQAVSKELMDLAMQNPWFRKSRFKSGKGKKLNIGGGGLGYRERPGLGAESSERNMLCSS
SFESYSKPATGAMGDRMTAMKSAFQSQYKSHFVAASSGPPKLSTKSNSTSGWTSAGSLSS
VPTESANGSEWSQGAAMSMPGFTSAGSLSSVPASQPSPQHNFPPPAPPPQRDTQRDRHGE
NRGRHDSHHPHSERGDRYSGEERYGDRDRRGGDGDRDRHGDGDRDRHGDGDRDRHGDRDR
ERHGDRERSSSSGSSSSSSRHSESRNGDGSRREREDRRSERDGGDKGSGEGRDRGDDSFA
VPEPPKRRKSRWDN
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgtttttggcagctctccgacgtcgtcgcacactgacggcgacagaaacttggcgcgca
ctgatgacgcaagattcctcaatgtcttctgaaaacactggacgttttactggcagcaga
aacagctcagccatgaactggaacaaaggtggtccaggtgtgaagcgagggtttgggttt
ggaggattttcccttgccgggaaaaaagatgaacctagccctcctccgaaatctcaaaca
aattttgcacccccaggatcaagcggatatgggaaaagccagcagctcccatccttctac
aaaatagggacaaaaagagcaaattttgatgaggaaaatgcgtattttgacgacgatgaa
gaggagtccagcaacaatgtggatttgccgtacatcccagcggagaactcgcccacacgg
ctgcagatgcagacaggtggcggctcagacagtgaagatgacccactggatgcctttatg
gcagaggttgagagccaagcagctaaggacatgaggaaactagaggaaaaagaaaaggag
aagaagtcagcaaagggtatacgtgatgacattgaagaagaagatgaacaagaagcctac
ttccgctacatggcagagaaccccacagccgggctgaccctagaggacgaggatgaaaac
attgactatgacagtgatgggaacccaatagcccctaccactaagaaaattatcctgccg
cttcctcccattgaccactctgagattgattacccaccctttgagaaaaacttctacaat
gagcatgaagagctcagttgcctgactgcaactcaagtgttcgacttaaggcacaaattg
aacctaagggtatctggtgctgtccctccaaaaccttgcacgagctttgcccacttcagc
tttgatgagcagctgatgcaccaaatccgcaagtctgagtatactcagcccacgcccatt
cagtgccaaggtttgcccatagctctttctggacgagacatgataggaattgcaaaaact
ggcagtggtaagactgctgcttttatctggcccatgcttgttcacatcatggatcaaaag
gaactggaggcaggggaagggcccatcgccatcattgtgtgtcccaccagagagctttgt
cagcagattcatgcagaatgcaagcgttttgggaaagcctactctctgcgttctgtggcg
gtttatggaggaggcagcatgtgggagcaggccaaagctctgcaggagggagcagagatt
gtcgtgtgcactccgggtcgtctgattgaccacgttaagaagaaggccacgtccctgcag
agagtgtcatacatggtgtttgatgaggcagatcgcatgtttgatatgggctttgaatat
caggttagatccgttgctagccatgtccgtccagacagacagacccttttgtttagcgct
actttccgaaagaagatagagaggctggccagagacatcttggtagatcctattcgagtg
gtgcagggagacatcggagaggcgaatgaggatgtcactcagatcgtggagatgttgccc
accgcggcggataaatgggactggctgacccggcggctggtggagttcacctcctccggc
tcggtccttatcttcgtcaccaagaaggcaaactgtgacgaactggcggctaacctgacc
caggagggccacagcctgggcctcctgcacggagacatggaccagagtgagaggaacaaa
gtcatcagcgacttcaagaaacagaatttgcccgtcctggttgccactgatgtagctgct
cgtggtctggacatcccgtccattcgcaccgtggtgaactacgacgtggcacgagacatc
gacacacacacacacaggattggtcgtactggtcgtgctggagagaaaggtgttgcttac
actctcctcacgaacaaagacaccacatttgctggtgacctcgtgagaaatctggaggga
gctaatcaagctgtttccaaagaactgatggatttagccatgcagaatccctggtttagg
aagtcccgattcaagagtggtaaagggaagaagctgaatattggcggaggtggtcttggt
tacagagagagaccaggccttggggctgaaagttctgagcgcaacatgttgtgtagcagt
agctttgaaagctacagcaaaccagccactggggcgatgggagaccgcatgactgcgatg
aaatcagccttccagtctcagtacaagagtcactttgttgctgcgtccagcggcccccca
aagctcagcactaagtctaacagcacgtcaggctggaccagcgccggtagcctgagctct
gtgcccacagagtctgccaatggctctgagtggtcccagggggctgccatgtccatgcct
ggcttcactagcgctggctctctgagctctgtgccggccagtcaacccagtccacagcac
aacttccccccgcctgcccctcccccgcagagagacacccagcgggacagacacggggag
aaccggggacgccacgacagtcatcacccccacagcgagaggggtgaccgatacagtgga
gaagaacgctatggagaccgggatcgtcgtggtggagacggagaccgcgatcgccacgga
gacggagaccgcgatcgccacggagacggagaccgcgatcgccacggagacagagatcgt
gaacgccacggggaccgggaacgcagcagcagcagcggcagcagcagcagcagcagccgc
cacagcgagagtcgcaacggagatggaagcaggagggaaagagaggatcggaggagcgaa
agggacgggggagacaaagggagtggggaggggagggacagaggagatgatagctttgct
gtccctgaaccaccaaagcgtagaaagagcaggtgggacaactaa
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integrated database retrieval system
