Gymnodraco acuticeps: 117548852
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Entry
117548852 CDS
T09661
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117548852 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gacu03019
]
117548852 (xab2)
03041 Spliceosome [BR:
gacu03041
]
117548852 (xab2)
Messenger RNA biogenesis [BR:
gacu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117548852 (xab2)
Spliceosome [BR:
gacu03041
]
Complex B
Other components
Prp19-related factors
117548852 (xab2)
Complex C
117548852 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
NRDE-2
TPR_MalT
LTN1_E3_ligase_6th
TPR_1
SNAP
Motif
Other DBs
NCBI-GeneID:
117548852
NCBI-ProteinID:
XP_034076249
UniProt:
A0A6P8UGJ1
LinkDB
All DBs
Position
Unknown
AA seq
846 aa
AA seq
DB search
MPSLNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNAGRSTLNMIYERALKELP
GSYKLWYNYLRERRKQIKGKCVTEPGYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENTEEYID
YLRSVGRLDEAALRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKDEDEDVDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNARQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYYEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYAGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVDDGERHTMFNIYIKRAAEIYGVTYTRAIYQKSIEVLPDMHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMTSQMMKATTSSTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQDK
PKPKEKILFVRSDTSRTELAELAKQANPDEIDIGDDDEDDNNQGPEEVQLEQKSVPTAVF
GGLKED
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaaacggaaaacccgatgttatgtttgaggacgatgatctcccttatgaa
gaagagatcatcaggaacccgtactcggtcaagtgctggatgcgttacatcgaattcaag
cagaatgcaggaagatccaccctgaacatgatctatgagagggctctgaaggagctgcct
ggcagctataagctgtggtacaattatctgagagagagacggaaacaaatcaaagggaaa
tgtgtcactgaaccaggatatgaagaggtcaataattgccatgaaagggcattagtgttc
atgcacaagatgccgagaatatggcttgattactgccagtttcttgtttctcaatgcaag
atcacaagaagtcggcaaacatttgaccgtgccctcagagctcttcctgttacacagcat
ccacgtatctggcctctgtatctccgctttgcccgtaacctgcccctgcctgagacagcc
attcgggtgtatcgcaggtaccttaagctttccccggagaatacagaggaatacatagac
tacttacgttctgttggccgcttggatgaagcagctttgcgactagcagctgttgtcaat
gacgagagctttgtgtccaaagagggcaagtctaactatcagctgtggcatgagctctgc
gacctgatctcccagaaccctgacaaagtgacatctctgaatgtcggagccatcatcaga
ggaggcctcactcgcttcacagaccaacttggaaaactctggtgttcattagctgactat
tacatcaggagtggtcactttgagaaggctcgtgatgtttatgaggaagccatcctcacg
gtggtaactgtaagggatttcacgcaagtgtttgatagttatgcccagtttgaagagagc
atgatcgcagctaagatggagaccactgctgagatgggaaaagatgaagacgaggatgta
gacatggagcttagactggcccgctttgagcagctgatagcccggcggccgctcctgttg
aacagtgttctactgcgacagaaccctcataatgtacatgagtggcacaagcgggttaaa
ctgtatgacggcaatgcacggcagatcatcaacacgtacacagaggcagtgcagacggtg
gatccaatgaaggccaccgggaagcctcactctctctgggtttcctttgctaaattctat
gaggaaaatgagcagcttgatgatgcccggaccatttttgagaaggctactaaggtgaac
tacaagcaggttgatgacctcgctgcggtgtggtgtgaatatggagagatggagcttcgc
catgagaactatgaacaggcactgcgtatactgaggaaagctacagccatcccatccaag
aaggctgagtactttgatgtatctgagccggtccagaacagagtttataagtccttgaag
gtctggtccatgctggcggacttggaggagagtctcggcactttccagtccacaaaagca
gtgtatgaccggatcattgacctccgcatcgccacaccacagatcatcatcaattacgcc
atgttcctcgaagagcacaactactatgaggaaagctttaaagcatacgagcgaggtatt
gctctctttaggtggccgaatgtttatgacatctggaacacttacctcaccaagttcatc
gatcgttatgcgggcaagaagctggaaagagctagggatttatttgagcaagccctcgac
ggctgcccggccaagtttgccaagaccatttacctgctgtatgccaaactggaggaggga
tatggattggcacgacatgccatggccgtctacgaaagagcaacgcaggcagtagatgat
ggggaacgacataccatgttcaatatatacatcaaaagagcagctgagatttatggagtc
acgtacacaagagccatctaccagaaatctattgaggtccttcctgatatgcatgccagg
gacatgtgtctgcgctttgccgacatggagagtaaactcggggaaattgatcgggcccga
gcaatctactcctactgctcccagatttgtgacccacgggtgaccgcaactttctggcaa
acatggaaagaatttgagatccgccatggaaatgaagacactattagagaaatgctaagg
atcaaacgcagtgtccaagccacctacaacacccaggtcaactttatgacctctcagatg
atgaaggccacgacaagctccacagtgtccgatcttgctccaggccaaatgggaattgat
gacatgaaaatgctggaacagaaagcacagcagctcgctgcagaggccgagcaggacaaa
cccaagcccaaagagaaaattctctttgtcaggagtgacacctctcgcactgagttggct
gaacttgccaaacaagctaatcctgatgagatcgacatcggtgatgatgatgaagatgat
aataaccagggaccagaagaggtgcagcttgaacagaagagtgtccctacagctgtcttt
ggagggcttaaagaggactga
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integrated database retrieval system
