Gymnodraco acuticeps: 117559312
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Entry
117559312 CDS
T09661
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117559312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gacu03019
]
117559312
03036 Chromosome and associated proteins [BR:
gacu03036
]
117559312
Enzymes [BR:
gacu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117559312
Messenger RNA biogenesis [BR:
gacu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117559312
mRNA degradation factors
5'-3' decay
Decapping complex
117559312
Chromosome and associated proteins [BR:
gacu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117559312
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
117559312
NCBI-ProteinID:
XP_034091900
UniProt:
A0A6P8W1H6
LinkDB
All DBs
Position
Unknown
AA seq
489 aa
AA seq
DB search
MATARTENSGPVIMGLNKQNGQLRGQTKPAPVQPAPTTQGKAPAAPQTVGGAAQDGGGIK
FGDDWKKSLKLPPRDDRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQALVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKHRQILLYSATFPISVQKFMSKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPSSIDKSLYVAEFHTSGGDCDVEEIEE
KPGRQQDGK
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggccagaacagaaaactctggccccgtcatcatgggactgaacaagcagaac
gggcagctcagaggacagaccaaaccagctccagtccagccagcacccacaactcaagga
aaggctccggctgcaccccagacagtgggcggtgccgctcaggacggaggaggcatcaag
ttcggggacgactggaagaagagcctaaagctccctcccagagacgacagagtcagaacc
tctgatgtcacgtctactaaggggaatgagtttgaagattactgtctcaaaagagaactc
ctgatgggtatctttgagatgggttgggagaaaccttcccctatccaggaggagagcatt
cccatcgccctgtctggacgggatattctggctcgggctaagaatggaacaggaaaaagt
ggagcctatctcatcccaatgctggagagaatcgacctgaagaaggactacatacaggca
cttgtcatggtgcccacccgggagctggcactgcaggtgagccagatctccatccagatc
agcaagcacctggggggggtcaaagtcatggcaaccacagggggcaccaacctgcgagat
gacatcatgcgtctggatgagaccgtgcatgtggtcattgccacgcctggtaggatcctg
gacttgataaagaaaggcgttgcaaaagtggatagagtccagatgatggtgatggatgag
gcggataagctgctgtctcaggattttgtggtgctcattgaggatatcatcagcttcctg
gccaagcacaggcagatcctgctctactctgcaaccttccccatcagcgtgcagaagttc
atgtccaagcaccttcagaaaccctatgagataaacctgatggaggagctgactctgaag
ggcatcactcagtactacgcctacgtcacggagaggcagaaagtccactgtctcaacacg
ctgttctccaggcttcagatcaaccagtcgatcatcttttgtaactccactcagagggtg
gagctgttggccaagaagatcactcagctgggatactcctgcttctacatccatgccaag
atgatgcaggaatacagaaaccgtgtgttccacgacttcagaaatggactgtgcagaaac
ctggtctgcactgatctgttcaccaggggcattgacatccaggctgtcaatgtggtcatc
aacttcgatttccccaagaacgctgagacgtacctccatcgcattggaagatcagggagg
ttcggtcacctgggcctggccatcaacctgatcacatcagaggaccgcttcaacctgaag
tccatcgaggaccagctggtgaccgacatcaagcccatccccagcagcatcgacaagagc
ctctacgtggccgagttccacacttccggaggagactgcgacgtggaggagatcgaggag
aaaccaggacgccaacaggacggcaaataa
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