Gymnodraco acuticeps: 117560945
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Entry
117560945 CDS
T09661
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117560945
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117560945
NCBI-ProteinID:
XP_034093975
UniProt:
A0A6P8VSW8
LinkDB
All DBs
Position
Unknown
AA seq
1844 aa
AA seq
DB search
MEEEEEEEDEEEEEEEGGGGGGGGGGTGGGGTGGGTGGGGGGGGGGSKGGSYLVSSVSKV
RSSSSGGTRRTAGSSGGLSPSSRERKVTSSRSGGYDGSSSANSSPEFARKDYGVYCSSTQ
RGRSESRESEIRARLQSASPSASRWTELDDVKKLLKGRSCSISPTRSNASITLPVPKKAS
VETKTISVASQSAGSTSFGSGVRSTGFHTIDTSGFYDAGLTSGRVDTGVNSSQYDVTVTS
DHYDTAVKSVPYAVGLKSGPFDTGVKSGQYDMSLKSGQYDTGIRSAQYDTSVRSAQYDTS
VRSGQYGVRSGQYDGSLISGQYDGSVRSGQYDTLDATLPTFSWSTTTLPSASTTVMAANT
SSYAYQAGNNNLAGGTAPVGLTSPSSLSVYGFQNNLAPTSTTVLTTSGGNVTTNLGGYGV
QKNLSNGGGVASTGVSATTRTTVDDSYKRDYKFLISDKENVAAKRDVDMLIMAKDSGKQF
TTSSVQMSGGSLSGDSMKKEKLISSYVETAPLKTESGNSYYGSSGTSGVVMKDKSTYAEI
DRDSGIFGGGGGFCCCSDACCSWWKWLLGLLLLSLLLLGLLFGLIALAEDVRKLKSRVGT
LESESSARTSRLSGTSNNINTFGAAGAGAAGAGAVGAAGAAGGGVGAGGGGTSHTDNTLY
MGGGAGSSGSKTQIGVAAGAGGSTGGGGNGLDVSIGGAGAGGATGASSGGAGGRGGSTGG
STGGGTGGGTGGGAGGSGTRLGGGSSSGTSFSGSSSSGTVLSGSAGSTGSGFSGGAGGSA
GTGHSEGGAFGTGVSGGHMDAAALQIMVQRMLRTEMHSQSYRAFLVSSVQGERGLTGPKG
DSGFPGIPGAPGSMGHAGPEGQKGQKGGQGDHGLDGAPGVRGREGQSGPRGDAGPAGFGA
KGERGSPGEPGSVGPKGSSGIPGLLGAPGQPGSQGFRGETGPHGPKGDRGLAGFQGLKGD
TGDTGARGVKGDGGIPGLQGLAGEKGSMGLAGTEGSRGGQGPAGIPGLRGPAGSPGDAAH
AGQPGLQGPPGIPGNPGSPGAKGETGDAGRIINAAGSSSFGIPGPPGPAGRPGLSGPIGP
AGLPGQTGAKGDRGFRGEQGEQGITARTSETLTSRHVSASGGSAISGLPGPPGPPGPAGD
SRPGLPGPPGPTGYGRPGPKGDRGEPGFSSSSGTFNTGPPGPAGAVGPRGSSGSPGPRGY
QGEAGQPGVPGTTGSSERVSSYGGGLGTPGPPGPPGLPGIQGIKGNTGAPGSPGSSRGSI
SVTSGPPGPAGPPGPPGQTGSFSSSTEMRQYISEYLSRSTQSAVRGLPGPPGPPGTPGSF
SGSIEDISTRMIAYMQRSGSGLSIGVQGPPGPPGPPGHGSGSLTVSGLISMLQREDVRRY
LSGPPGPQGPPGQPGTSGGAGGFSGSFSVEEISTYVFKIMNDRGIARGLPGPPGPAGPSV
AVGSSFSQASIDYSALVRNSDFRSWVASAVQQGISGPPGIPGQPGPPGAQGPPGVSTATV
YGAGTGGSGYSLEDIQRYLQGSGFRGLPGPPGPQGPAGPSGGHSGSVSYSGNFPRESIRA
EVQEYLTSDNVRRAIIGPPGPMGPMGPRGEQGESGYVLSRTQSHIQSQGQGQGQGQGYSQ
GQGQGQGQGQGQGQGQGQSQGQGQGQGQGQGQGYSQGQGQGQGQSQGQGQGQGQGYSQSL
NYAQSDSRIGSEYRNIDLSNLDYSSVAIQVSDLIKSKGLLQEYLVEGPWRAHVRAIQGPP
GPPGPSGPPGQSRVIGAYGNVTADLMQFFRTYGTIAGPPGENGPRGERGYPGPRGERGDP
GPPGLSGLPGAYTVQVPHRVQKRDAGDEMVARRRQKLRRHAGSG
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaggaggaggaggaggacgaggaggaggaggaggaggagggaggaggaggg
ggaggaggagggggaggaactggagggggaggaactggaggaggaactggaggaggtgga
ggaggtggaggaggtggaagcaaaggcggcagttatctcgtgagctcggtgtcaaaggtc
aggtcgagctcatctggcggtaccaggagaactgcaggctcatcaggaggcctgtcgcca
tcttcccgggagaggaaggtcacatccagccgctcaggaggttatgatggaagttccagc
gctaattcctccccagagtttgcacgcaaagattatggagtctattgctccagcacccaa
agagggaggagcgaaagcagagagagcgagatcagagccagattacagagcgcctctccc
agtgccagcagatggacggagctggacgacgtgaagaagcttctgaaggggcgctcctgc
agcatcagccccactcgctccaacgcctccatcaccctgccggtccctaaaaaggccagc
gtggaaaccaagactatctcagtggcctctcagtcggcaggttcaacttcctttggctct
ggtgttagatcaaccgggttccacaccattgatacatcaggcttttatgacgccggtctg
acatccgggcgggttgatactggtgtaaactcaagccagtatgatgtcaccgtgacatca
gaccactatgatactgctgtgaaatctgtcccgtatgctgttggtttaaaatcaggaccg
tttgatactggtgtgaagtcaggacagtacgacatgagtttgaaatcagggcagtatgat
accggcataagatcagcccagtatgatactagtgtcagatcagcccaatatgatactagt
gtgagatcaggccagtatggtgtgagatcaggccagtatgatggtagtctgatatcaggc
cagtatgatggcagtgtgagatcaggccagtatgacacactggacgccacacttcctact
ttctcctggtccaccaccacgctgccctccgcctccaccacggtgatggctgccaacacc
agcagctacgcctaccaggccgggaacaacaacttggctggaggaaccgctccagttggt
ctcacctcaccctcctccctctccgtttacggcttccagaataacctggctcccacctct
accactgtgctcaccaccagtggaggaaacgtgactactaacctaggaggttatggcgtt
cagaagaatttgtcaaatggtgggggagtcgccagcactggagtctctgcaaccactaga
accacagttgatgattcctataagagagactataagttcctgatctctgacaaggagaac
gtggcggccaagagagacgttgacatgctgatcatggctaaagacagcgggaagcagttc
accaccagcagtgttcagatgagtggagggtcgctgtcaggagattcgatgaagaaagag
aagcttatttcaagctacgttgagacggcgccactgaagacagagagtggcaactcttac
tacgggtcatctgggacatctggagttgtgatgaaagacaaatcaacctatgcagagatc
gaccgggacagcgggatctttggaggcggaggaggattctgctgctgctcggacgcgtgt
tgctcctggtggaaatggctgctgggtcttctcctcctctccctgctcctgctgggactc
ttgtttgggcttattgcactggctgaggacgtgagaaagctgaagagtcgagtgggtacg
ctggaatctgagtcctccgctcgtaccagccggctgtcaggaacttcaaataacatcaac
accttcggagccgctggagctggagctgcaggagcaggagcggttggagctgctggagct
gctggaggtggtgtaggtgcaggtggaggaggtacctcccacaccgacaacacgctatat
atggggggtggagctggaagttcgggatccaaaacacaaatcggtgttgcagctggtgct
ggcggctctactggtggaggtggaaacggccttgatgtcagcattggtggtgctggagcc
ggtggagcgactggggcaagttctggtggtgccggtggcagaggtggcagtactggtggc
agtactggtggcggtactggtggcggtactggtggcggtgctggtggttctggtacccgt
ctcggtggtggaagttcttctggaacctctttcagtggctcttctagttctggtaccgtt
ctcagtggctctgccggcagcactggttctggtttcagtggcggtgccggcggttctgct
ggtaccggccacagtgaaggcggtgccttcgggaccggagtgagcggaggacacatggat
gctgctgctctgcagatcatggtccagcggatgttaagaactgaaatgcattcccagtca
tacagagcttttctagtgtcctcagtgcagggagagagaggacttactggacctaaagga
gactctggtttccctggaattccaggtgctccgggctccatgggacatgcaggccctgag
ggtcagaaaggacagaaaggaggtcaaggtgatcatgggctggatggggcacctggcgtc
aggggtcgcgagggccagtcgggccccagaggcgatgcaggacctgcaggctttggagcg
aaaggtgaaagaggttctcccggggaacctgggtctgtcggtcctaaaggctcaagtgga
attcctggtcttcttggagcaccaggtcaaccaggttctcagggtttccgtggcgagaca
ggaccacatgggcctaaaggagacagagggcttgctggattccaaggacttaaaggtgac
actggtgatacaggcgccagaggtgtgaaaggtgatggtggtataccgggtctgcagggg
ctggctggagagaaaggatcaatggggttggctggaactgaaggatcaagaggtggccaa
gggcctgcaggtattcctggactcaggggtcctgctgggtctcctggagatgctgcacat
gcaggacaacctgggcttcaaggaccaccagggataccagggaacccagggagtcccggc
gctaaaggggaaacaggtgacgctggaagaatcatcaacgcagctggatcctcttctttc
ggcatcccaggtcctcccggccctgctggacgtccaggattatcaggtccaattggccct
gctggtctgcctggccaaactggtgctaaaggtgacagaggatttaggggcgagcaggga
gaacaaggaataacagcgagaacatctgaaaccttgacctcaaggcatgttagcgccagt
ggaggatcagcaatatctggcctccccggcccacctggtccacctggacctgcaggagat
tcaagaccaggactgcccgggcctccaggtccaacaggttatggaagaccagggcctaaa
ggagacagaggggaacccggcttttcatccagctcaggaacgtttaatactggaccgcca
ggaccagctggggctgtcgggcctagaggatcatcaggttctcctggaccaagaggatac
caaggtgaagcagggcagccaggtgtgccgggaaccacagggagctctgagagagtatcc
tcttatggtggaggactcgggacccctggacctccaggtccgccaggacttcctggaata
cagggaatcaaagggaacactggagctcctggtagtcctggctcttcgagaggctccatc
tcagtcacctcaggcccccccggccctgcaggtcctcccggccctccgggtcagacgggc
tccttctcttcttctactgagatgcggcagtacatctctgaatatctgagtagaagcaca
cagtcggctgtccgcgggctcccgggcccccctgggcctccaggaacccctggatccttc
tcaggctcgatcgaggacatatccactcgtatgatcgcatacatgcaacgttcgggctca
gggctcagcatcggggttcagggtcctccgggaccacccggcccccctggacacggctct
ggttccctgacagtcagtgggctcatctccatgcttcagagagaggatgtgaggagatac
ctgtccggacccccaggcccacaaggccccccgggtcaaccagggacatcaggaggagca
ggaggattttcaggcagtttctctgtggaggagatatccacatacgtcttcaagatcatg
aatgacagagggattgcgagaggtctgcccgggccgcccggtcctgctgggccgtctgtt
gctgtgggctcgagcttctctcaggcttcgattgactattctgctcttgtgaggaattca
gacttccgctcttgggttgcctctgccgtacaacaaggtatttcaggtcccccgggcatc
ccaggacagcctggccctcctggcgctcaggggccgccgggggtctccaccgccaccgtg
tacggggccgggactggggggagtggctacagcctggaggacattcagcgttacctgcag
ggttctggcttcagaggtctccccggccctcctggtccacagggaccagcgggaccatca
ggcggccactccggatcggtttcctacagtggaaacttccctcgggagagcatccgcgct
gaagtccaggagtatctgaccagtgacaatgttcgtcgtgccatcatcggacctccgggg
ccgatggggccgatgggaccgaggggagagcaaggagagtcaggctacgtcctgagccgc
acgcagagccatatccagagccagggacagggccagggtcagggccagggctatagtcag
ggccagggtcagggtcagggtcagggtcagggtcagggtcagggccagggccagagtcag
ggccagggccagggtcagggccagggtcagggccagggctatagtcagggccagggtcag
ggccagggccagagtcagggccagggtcagggccagggccagggctatagccagagcctg
aactacgctcagagtgactctcgaatcggctctgagtacagaaacatcgatctcagcaac
ctggactactccagcgtcgccatccaggtttcagacctcatcaaaagtaaaggtctgctg
caggagtatctggttgagggtccttggagggcgcatgttcgagcgattcaaggccctcct
ggtcctcctggcccctccggaccaccgggccagagccgcgtcatcggggcctacggcaac
gtcacagcggacctcatgcagttcttcagaacctatggcaccatcgcaggccctccagga
gagaatggaccgaggggtgagagggggtatccaggacccaggggagagagaggtgatcct
gggcccccaggtttatcaggactaccaggggcatacactgtccaagttccacacagggtg
cagaagagggatgcaggcgatgaaatggttgctcgtcgtcgtcagaagcttcgccgtcac
gcaggcagcggttaa
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integrated database retrieval system
