Gymnodraco acuticeps: 117561539
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Entry
117561539 CDS
T09661
Symbol
col5a1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117561539 (col5a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gacu00536
]
117561539 (col5a1)
Glycosaminoglycan binding proteins [BR:
gacu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117561539 (col5a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
A-ATP_synth_H_N
Motif
Other DBs
NCBI-GeneID:
117561539
NCBI-ProteinID:
XP_034094922
UniProt:
A0A6P8X4K7
LinkDB
All DBs
Position
Unknown
AA seq
2083 aa
AA seq
DB search
MDTHIRWKVKRTIRDAQITLAVILLFVTSQASSVEPADLLKILDFHSLPEGVLKTTGLCS
HRRSTQGPDVAYRVSKDAQLSAPTQQLYPGDVFPEDFSILATVKPKKGSQSFLLSVYNEQ
GIQQLGLEVGRSPVFLYEDHTGKPSPEDYPLFRGVNLADGKWHRVAISVHKQTITLILDC
KKKTTQKLLRSPHPIIDTKGIVVFGTRILDEEVFEGDIQQLLIVGDHRAAYDYCEHYSPD
CEVPMPDQPQNQDPNTDEYNTEEDSYYYEYPYYEDTEGKPLESTSDAETTKEVKMADEDS
VVSEVEEALRGSGAIGGKVTSITSSSSAGSSAGSSAGSSVGSSSSSSSSSTGTATAGGEA
DGEETSPYESYDGYGNYETYYDEATAAPDTDSSRRVTITSSSIGTGGEVDLEAEGKIDLS
STSSIERRVTGGEGSSITMTANKTSVATSVGDYGDEYDYGTNDAYSLGAEGDTTSTVHVS
GGGGSSSSSVHVSGGGGGGSSSSDHVSGGGGDGGGSSSSVHVSGGGGDGGGSSSSVHVSG
GGGDGGGSSSSSVHVSGGGGGSSSSDHVSAGGGGSSSSDHVSAGGGGGGGSSSSTITIGG
GSSSAGGSSTTGGGSASAGTGAGGSIATGTGLGVEGEGYYTDLDGFKEEHLSEYGNLDSY
GTYDGLDYGDEGKVLPAETGTDYGQVHGARGEKGQKGEPAVIEPGMLVEGPSGPEGPTGL
PGPPGSSGQPGSSGDSGERGLPGRAGLSGADGLPGPPGTVLMLPFRMSSGGDSGQKGPAV
SAQESQMQAIMQQARLAMRGPTGPMGLTGRSGILGPPGGSGLKGESGDSGPQGPRGPLGS
SGPSGKPGRRGRFGADGARGMPGQSGTKGDRGFDGLSGLPGEKGHRGESGPSGPHGGPGE
DGERGDDGEIGPRGLPGESGPRGLLGPKGPQGPSGPPGVTGMDGQPGPKGNIGPQGEPGP
SGQQGNPGTMGLAGPQGAIGPPGDKGPFGKPGLPGMPGADGPPGHPGKEGPNGEKGHLGP
AGPQGPLGYPGPRGVKGADGVRGLKGHKGGKGEDGFPGFKGDLGIKGDRGELGPGGPRGE
DGPEGPKGRSGLLGDSGPLGPSGEKGKLGVPGLPGYPGRQGPKGSQGFQGFPGANGEKGA
RGLAGKSGPRGQRGPTGPRGERGARGPTGKNGPKGTSGNDGPPGPLGERGLPGPQGPTGF
PGPKGPPGPAGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGDRGHPGP
PGPPGEQGLPGSAGKEGAKGDSGPAGPLGKDGPPGLRGFPGERGLPGPVGAHGLKGSEGP
HGPPGPAGSPGERGPAGPAGPTGLPGRSGPQGPPGPSGEKGGPGEKGPQGPAGRDGIQGP
VGLPGPGGPPGPPGEDGDKGELGESGQKGGKGDKGEHGPPGPTGPQGPVGAPGPAGSDGE
PGPRGQQGLFGQKGDEGSRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGP
SGPPGADGPQGPPGGIGNPGSVGEKGAAGETGVPGLQGELGGPGPRGERGEKGEGGPAGT
SGPPGPKGPPGDDGPKGSPGPSGFPGDSGPPGEPGAAGLDGPAGDKGDDGEAGQAGSPGP
TGESGPSGPPGKRGPHGISGPEGRQGEKGTKGETGLEGPQGKTGPVGPQGSPGKPGSEGL
RGIPGPVGEQGLPGSTGPDGPPGPMGPPGLPGMKGDSGVKGEKGHPGLIGLIGPPGEQGE
KGDRGLPGPPGQHGSKGDNGIAGPSGPLGPLGPPGLPGPSGPKGAKGSSGQTGPKGETGT
SGPPGQPGPPGDVIHPLPMMSNMKGRTRRNIDASEVMDDMPADTNYKDYEDGMEEIFGSL
NSLKLEIEQMKHPMGTQSNPARTCKDLQLCHPDFPDGEYWIDPNQGCSRDSFKVYCNFTA
GGESCIFPDKKSEGARLTSWVKETPGSWFSEFKRGKLLSYVDAEGSPVSVVQMTFMRLLS
AAARQNMTYNCYQSVAWHDQEQDGYDKAIRFLGSNDEEMSYDNNPYIRAVVDGCALKKGY
EKTVIEINTPKVEQVPFVDIMFNDFGGSAQKFGFEVGPVCFIG
NT seq
6252 nt
NT seq
+upstream
nt +downstream
nt
atggatacccatataagatggaaagttaaacggacgataagggacgcccaaatcacttta
gcggtgattctgctttttgtcacatcgcaagcaagttcagtggaacccgcagacctcttg
aagattttagattttcacagtttacccgagggtgttctaaaaacaacgggtctctgctca
catcggaggtcaacacaaggacccgatgtcgcctacagagtctccaaagacgcccagctg
agcgcccccacccaacagctgtatccaggtgatgtgttcccggaggacttttccatcttg
gccacagtgaagcctaagaagggcagccagtccttcctgctgtctgtgtacaatgagcag
ggcatccagcagctcgggttggaggtgggccgttctccggtgttcctgtacgaggaccac
acaggcaaacccagccctgaggactaccccctcttcagaggagtcaacctggctgacgga
aaatggcatcgagtggccatcagtgtgcacaagcagaccatcaccctcattctggactgt
aaaaagaagaccacccagaagctactccgaagcccccaccccatcatcgataccaaggga
attgtagtttttggaactagaatacttgatgaagaagtcttcgagggagacatccagcag
ctattgattgtaggagaccatcgtgctgcctatgactactgtgagcactacagtcctgat
tgtgaagtgcccatgcccgaccagcctcagaaccaggaccccaacaccgatgaatataac
acagaggaggacagctactattacgagtacccttactatgaggacaccgagggaaagcct
cttgaatcaacatctgatgctgagacgacaaaagaagtcaagatggcagatgaagacagc
gtggtgtctgaagtggaggaggctctgaggggttctggtgccatcggcggcaaagtgacc
tccatcaccagcagctcatcagctggatcatccgctggctcatccgctggctcatccgtt
ggctcttcatccagctcttcatccagctccacaggaactgccactgccggaggagaagcc
gacggagaggagaccagcccttacgaaagttacgatggctacggtaactacgagacttac
tatgacgaggccacggcagccccagatacagactcctcccgacgggtcaccatcaccagc
agcagcatcggcaccgggggcgaggtggacctggaggcagagggaaagattgacttgagt
tcaacctccagcatcgaaaggcgggtcaccggtggagaaggatcttcaatcaccatgacc
gccaataagacatcagttgcaacttccgttggtgactatggtgatgagtatgattatggc
accaacgacgcttatagccttggtgcagaaggtgacaccaccagtaccgtccatgtcagt
ggaggtggaggcagcagcagcagttcagtccatgtcagtggtggtggtggaggaggcagc
agcagttcagaccatgtcagtggtggtggaggagatggaggaggcagcagcagttcagtc
catgtcagtggtggtggaggagatggaggaggcagcagcagttcagtccatgtcagtggt
ggtggaggagatggaggaggcagcagcagcagttcagtccatgttagcggaggtggagga
ggcagcagcagttcagaccatgtcagtgcaggtggaggaggcagcagcagttcagaccat
gtcagtgcaggtggaggaggtggaggaggcagcagcagttctaccatcactatcgggggc
gggtcttcctctgcggggggatcttccaccaccggagggggatcagccagcgccggcacc
ggagcagggggctccatcgccacgggaacaggcctgggtgttgaaggagagggatactac
acagacctggatgggttcaaggaggagcacctcagcgaatacggcaatttagactcgtac
ggcacctacgatgggctcgactatggagacgagggcaaagtgctgcctgctgagaccggg
acagattatggacaggtccacggagcccgtggcgagaagggacagaagggagagcctgct
gttattgagcctggaatgttagtggagggcccgtctgggcctgaagggccaacaggcctc
cccggacccccaggttcttctggccaaccaggcagttctggagattctggagagaggggt
cttcctggtcgtgctggcctttccggtgctgatggtctgcccggaccccctggtactgtc
ctgatgctgcctttcagaatgagttctggtggtgactccggacagaagggccctgctgtg
tcagcacaggagtcccagatgcaagccatcatgcagcaggctaggctggctatgcgcggc
cctacaggtcccatgggtttgactggcaggtccggcattctgggtcctcccgggggctca
ggcctgaagggagagtctggagactcaggtcctcagggaccacgtggacccttgggatcc
tctggaccctctggaaagcctggcagaaggggtcgttttggagccgacggtgccaggggc
atgccgggacagtctggaaccaagggagaccgaggctttgatggtctttccggacttcct
ggtgaaaaaggacacagaggtgaatctggaccctctggacctcatggtggtcctggagag
gatggagaaaggggagatgatggagagatcgggccccggggacttcctggcgaatcaggg
ccccgcggtttgctcggaccaaaaggacctcagggaccctctggaccccctggtgttact
ggaatggatggacaacctggacccaaaggaaacatcggacctcaaggagaaccaggacct
tctggacagcaaggaaacccaggaaccatgggtcttgcagggccccaaggagccatcgga
cccccaggagacaagggacctttcggaaaaccaggcttgccaggaatgccaggagctgac
ggcccaccgggtcaccctggaaaggaagggcctaacggagagaaaggacacttgggccct
gctggccctcaaggaccccttggttatcccgggccccgaggtgtgaagggagccgacggt
gtccgcggtctgaaaggacacaagggtggaaagggagaagatggattccccggcttcaag
ggagatttgggaatcaagggcgacaggggagagctcggcccaggaggacccagaggagag
gacggtcccgagggtcccaagggtcgctcaggtctcttaggagattctggtcctctcggc
ccatctggtgagaagggtaaactcggagttcccggactccccggatacccaggaagacaa
ggaccaaagggatctcaaggtttccaaggattcccaggagccaacggagagaaaggagct
cggggattggcagggaagtctggcccacgcggacagaggggaccaacgggacctcgagga
gagagaggagcaaggggaccaacaggaaagaatggaccaaagggtacctcaggaaatgac
ggcccaccaggacctcttggcgagaggggtctgccagggcctcagggaccaacaggtttc
ccaggaccaaagggccctcctggacccgcaggaaaagacggactgcccggacatcctgga
cagagaggagagactggattccaaggcaagactggccctcctggccccccaggtgtggtt
ggacctcagggaccaacaggtgagactggaccaatgggagatcgcggtcatcctggaccc
ccaggcccacctggtgagcagggtctacctggatctgcaggaaaggaaggagccaagggt
gactccggtcctgctggcccactcggtaaggatggccctcctggactcagaggtttcccc
ggagagagaggtctgcccggccctgtgggggctcacggcctgaaaggaagcgaaggaccc
catggcccacctggacccgctggttctcctggtgagcgcggccctgctggcccagccgga
cctacaggtctgcctggacgttccggaccccagggacccccggggccttccggagagaaa
ggaggacccggagagaaaggacctcaaggcccagctggaagagacggtattcagggccct
gtgggtctgcccggccctggaggacctcctggaccccccggagaggacggagacaaggga
gagcttggagagtccggccagaaaggaggcaagggtgacaaaggagagcatggcccacct
ggtcccaccggccctcaaggacctgttggagcacccggtccagctggttcggatggagag
cccggtcccagaggtcagcagggtctgtttggccagaagggagatgaaggatccagagga
ttccccggacctccaggtccagttggtctgcagggcttgcctggtccccccggtgagaaa
ggtgaaactggagacgttggtcaaatgggtccacccggtccacctggtcccagaggcccc
tcaggacccccaggagctgacggccctcagggacctcccggtggcattggaaaccctggc
tctgttggagaaaagggagctgctggagaaacaggagtgcccggacttcagggagaactc
ggaggaccaggtccaagaggagagagaggagagaagggagagggtggtccagctggtaca
tcaggaccccccggccctaagggtccccctggagatgacggtcccaaaggaagccccggt
ccaagtggtttccctggtgactctggtccccctggagagcccggtgcagctggattagat
ggacccgctggtgacaagggagatgacggagaggctggtcaagctggttctcctggaccc
actggagagtctggtccctctggacccccaggaaagagaggcccccatggaatatcagga
cctgagggaagacaaggagagaagggaactaagggagagactggtttggaaggtccccaa
ggaaagacaggccccgttggtcctcaaggatcacctggcaagcccggttctgaaggcctg
cggggtatccctgggccagttggagagcaaggtcttcctggttctacaggcccagatgga
cctccgggacccatgggtcctcctggtttacctggtatgaaaggagattctggcgttaaa
ggagaaaagggccatcctgggcttattggtcttatcggacccccaggagaacagggagag
aagggtgaccgtggtctgcccggccccccaggacaacatggctccaagggagacaatggt
attgccggtccttcaggtcctctcggtcccctcggcccccctggactacctggtccatct
ggtcctaaaggagctaaaggatcatctggtcaaactggaccgaagggagagaccggtaca
tctggacctcctggccaacctggcccccccggcgatgtcatccaccccctccccatgatg
tccaacatgaagggcagaacccgcaggaacatcgatgccagcgaggtgatggacgacatg
cctgcagataccaactacaaggactacgaagacggcatggaggaaatctttggctcgctc
aactccctgaagctggagatcgagcagatgaagcatccgatgggaacgcagagcaacccg
gcgcgtacctgtaaagacctgcagctctgccaccccgacttccccgatggtgagtactgg
attgatccaaaccagggctgctctcgggactccttcaaggtttactgcaacttcacagca
ggaggagagagctgcatcttcccagataagaagtctgaaggggctaggctcacatcctgg
gtaaaggagactcccggctcctggttcagtgaattcaaacgtggtaaactgctctcctac
gtggatgccgagggtagccccgtcagcgtggtccagatgaccttcatgcggctgctgagc
gcggctgccagacagaacatgacgtacaactgctaccagtcggtggcctggcatgaccag
gagcaggacggctacgacaaggccatccgcttcctgggctccaacgacgaggagatgtct
tacgataacaacccctacatccgtgcagtggtcgacggctgtgcgttgaaaaagggttat
gaaaagacagttattgagatcaacacgccaaaggtggaacaggtgccatttgtggacatt
atgttcaacgactttggcggctccgcgcagaagtttggatttgaagtgggccccgtctgt
ttcatcggctaa
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integrated database retrieval system
