Granulicatella adiacens: K8O88_01620
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Entry
K8O88_01620 CDS
T07507
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gad
Granulicatella adiacens
Pathway
gad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K8O88_01620 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gad03021
]
K8O88_01620 (rpoB)
03400 DNA repair and recombination proteins [BR:
gad03400
]
K8O88_01620 (rpoB)
Enzymes [BR:
gad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K8O88_01620 (rpoB)
Transcription machinery [BR:
gad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K8O88_01620 (rpoB)
DNA repair and recombination proteins [BR:
gad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K8O88_01620 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UAK94032
LinkDB
All DBs
Position
complement(358981..362610)
Genome browser
AA seq
1209 aa
AA seq
DB search
MAHHDVKYGRHRVRRSYARISEVLELPNLIEIQTDSYQWFLDEGIREMFKDISPIEDHTG
NLSLEFLDYELHAPKYNLQEARNHDANYAAPIYVKMRLVNKETGEVKDQEVFFGDFPLMT
EMGTFIINGAERVIVSQLVRSPGAYFHDRPDKNGKQLYGSTLIPNRGAWLEYETDSKDIS
YVRIDRTRKIPLTVLVRALGFGSDELIQEIFGDSETLRLTLDKDVHKRMDESRTEEALKD
IYDRLRPGEPKTAESSRNLLTARFFDPRRYDLAAVGRYKVNKKLNLKNRLLHQTIAENLV
DPETGEIVVEKGTVLERDVMEKVVEVLEKGANLFTLHPSEDGVIKEPVIIQTVEVYSPAD
PERVIKVIGNGNVTEDVKHVTASDIIATISYFLNLYEGIGTTDDIDHLGNRRIRSVGELL
QNQFRIGLSRMERVVRERMSIQDTATVTPQQLVNIRPVVAAIKEFFGSSQLSQFMDQTNP
LGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAK
INKYGFIETPYRRVDWNTHKVTDKIDYLTADEEDSFVVAQANSPLNEDGSFVNDVVMARY
VSENLEVPVERVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLLNPKAP
FIGTGMEYVSAHDSGVALLCKRDGVVEFVDAKEVRVRTADGSLDTYHITKFHGSNAGMCY
NQRPIVAQGDKVVKGEILADGPSMEKGELALGQNVLVAFMTWEGYNYEDAVIMSERLVKD
DVYTSIHIDDYDSEARDTKLGPEEITREIPNVGEDALKNLDADGIIRIGAEVKDGDILVG
KVTPKGLTEQSPEERLLHAIFGEKAREVRDTSLRVPHGGGGIVRDVRVFTRAAGDELAPG
VNKLVRVYIVQKRKINEGDKMAGRHGNKGVVSRIMPEEDMPFLPDGTPVDIMLNPLGVPS
RMNIGQVLELHLGMAARELGIYIATPVFDGAQDEDVWGTVAEAGMARDAKTILYDGRTGE
PFDNRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAAYTLQEILTYKSDDVVGRVKTYESIVKGQQISRPGVPESFRVLVKELQALGLDMKV
LDAQDEEIKLEDMDEDEGIRFSDVERTNERRAQLDEYSDRAAELSAAEETSSEDVEVDVV
EDDFEIDEE
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
ttggcacatcatgatgtgaaatacggtagacaccgtgtgcgtagaagttatgcacgaatc
agtgaagtattagaattacctaatctgattgaaatccaaacagattcttaccaatggttc
ttggatgaaggaatccgtgaaatgttcaaggatatttcgcctattgaagaccatacaggt
aatttatcattggagttcttagattatgaattacatgctccaaaatataatttacaagaa
gctagaaatcacgacgcaaattacgcggctccaatttacgtaaaaatgcgtttagtgaac
aaagaaactggtgaagtgaaagaccaagaagtattctttggtgacttcccattaatgaca
gagatgggtacatttatcattaatggtgctgaacgtgtaattgtatctcaattagttcgt
tcaccaggtgcttatttccatgacagacctgacaaaaacggtaagcaattatatggttca
acattaattccaaaccgtggtgcatggttagagtatgaaacagactcaaaagacatttct
tatgtgcgtatcgaccgtactcgtaaaattccattaacggtattagttcgtgcgttaggt
ttcggttcagatgagcttatccaagaaatcttcggagatagcgaaacattacgtttaact
ctagataaagatgttcataaacgtatggatgaatctcgtacagaagaagccctaaaagac
atttatgaccgtctacgtccaggtgaaccaaaaacagctgaaagttcgcgtaacttatta
acagctcgtttctttgacccacgccgctatgatttagcagcagttggacgctacaaagtc
aataaaaaattaaacctaaaaaatcgtttattacaccaaacaattgctgagaacttagta
gatcctgaaacaggagaaatcgttgttgaaaaaggaacggttcttgaacgtgatgtaatg
gaaaaagtggtagaagtccttgaaaaaggtgcgaacctattcactttacatccatcagaa
gacggtgttattaaagagccagtaataatccaaacagtagaagtttattcaccagctgac
ccagaacgcgtgattaaagtcatcggtaacggaaacgtgacggaagacgtgaaacacgtg
actgcaagcgacattatcgctacaatcagctacttcttaaacctttacgaaggaatcgga
acaacagacgacatcgaccacttaggaaaccgtcgtatccgttcagtaggggaattatta
caaaaccaattccgtattggtttatctcgtatggaacgtgtggttcgcgaacgtatgtca
attcaagacactgcgacagtgacaccacaacaattagtcaatatccgtccagtcgttgcg
gcaattaaagagttcttcggatcttctcaattgtcacaattcatggaccaaacaaaccca
ttaggagagttaacacacaaacgccgtctatcagcgttaggacctggtggtttgactcgt
gaccgtgctggatatgaagttcgtgacgttcactattctcactatggtcgtatgtgtcct
atcgaaactcctgaaggaccaaacatcgggttgatcaacagcttatcaacctatgcgaag
atcaataaatatggtttcatcgaaactccataccgtcgtgtagactggaacactcataaa
gttacagataaaattgactacttaacagctgacgaagaagatagcttcgtagtagcgcaa
gcaaactctccattaaatgaagatggaagcttcgtgaatgatgttgttatggcgcgttac
gtatctgaaaacttagaagtgccagtagaacgcgttgactatatggacgtttctccaaaa
caagtagttgcagttgcgacagcatgtatcccgttcttagaaaacgacgactcaaaccgt
gcgttgatgggtgcgaacatgcaacgtcaagctgttccattgttaaatccaaaagcacca
ttcatcggtacaggtatggaatacgtatctgcacatgactcaggggttgccttgttatgt
aaacgtgatggtgtagtcgaattcgttgatgctaaagaagtacgtgtacgtacagctgat
ggctcattagatacttaccacatcactaagttccacggatcaaacgcgggtatgtgttac
aaccaacgtccaatcgtggcacaaggggataaagtcgttaaaggcgaaatcctagcagat
ggaccttctatggaaaaaggtgaattagcattaggacaaaacgttctagtagcgttcatg
acttgggaaggttacaactacgaggatgcggttatcatgagtgaacgtctagttaaagac
gatgtgtatacttcaatccacatcgatgactacgattcagaagctcgtgatacaaaactt
ggacctgaagaaattactcgtgagattccaaacgttggggaagacgcattgaagaaccta
gacgcagacggaattattcgtatcggtgccgaagttaaagatggtgacatcttagttggt
aaagtaactcctaaagggttaacagaacaatcaccagaggaacgtttattacacgcaatc
ttcggtgaaaaagctcgtgaagttcgtgacacatctctacgtgtacctcacggcggtggc
ggtattgtccgtgatgtacgtgtattcacacgtgcagcaggtgatgaattagcacctggc
gtaaacaaattagttcgtgtatatattgtacaaaaacgtaaaatcaatgaaggggataag
atggccggacgtcacggtaataaaggggttgtttcccgtattatgccggaagaagatatg
ccattcttaccagatggaacaccagttgacatcatgttaaacccattaggggtaccttca
cgtatgaacatcggacaagtgttagagttacacttagggatggctgctcgtgaattaggt
atttacatcgcaacaccagtattcgatggtgcgcaagatgaagacgtatggggaactgtt
gcagaagcgggtatggctcgtgatgcgaaaacaattctatatgatggacgtacaggggaa
ccattcgataaccgtgtgtcagtaggggttatgtacatgatcaaacttgctcacatggtt
gacgacaaacttcacgctcgttcaattggaccatactcactcgttacacaacaacctctt
ggaggtaaagcgcaatttggtggacaacgtttcggggaaatggaagtatgggcactggaa
gcttatggtgctgcgtatacattacaagaaatcttaacgtacaaatcagatgacgttgtt
ggtcgtgtgaagacttacgaatcaatcgttaaaggtcaacaaatttcacgtccaggtgta
cctgaatcattccgcgtattagtaaaagaattacaagctttaggtcttgatatgaaagta
ctggatgcacaggatgaagaaatcaaactagaagatatggacgaagacgaaggaattcgt
ttcagtgacgttgaaagaacaaacgaaagacgtgcgcaattagatgaatattcagaccgc
gcagctgaattatcagcagcagaagaaacttcatctgaagacgttgaagtagacgttgtt
gaagatgattttgaaattgacgaagagtaa
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integrated database retrieval system
