Granulicatella adiacens: K8O88_09385
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Entry
K8O88_09385 CDS
T07507
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gad
Granulicatella adiacens
Pathway
gad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8O88_09385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gad03019
]
K8O88_09385
Messenger RNA biogenesis [BR:
gad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K8O88_09385
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
ODP
Motif
Other DBs
NCBI-ProteinID:
UAK93670
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Position
complement(1896372..1898069)
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AA seq
565 aa
AA seq
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MKPNIKNNETGVFAFGGLGEIGKNTYGVQFQDELIILDAGIKFPEDDLLGIDYVIPDYSY
IVQNINKVKGLFISHGHEDHIGGIPFLIKQANIPIYATKLAMSLIRNKLEEHGLLRDAIL
HEIDEDSVIKFRKTQVSFYRTTHSIPDAFGIVIKTPPGNIVFTGDYKFDFTPVGEPANLH
RMAQIGSEGVLVLLGDSTNSEVPGFTQSEQVVGKSIKEIIQRVDGRIIFATFASNVSRLK
QVTDVAVATGRKLAVFGRSMEASFRTARELGYIQAPDDTFIDGREINQYPSEKVIILCTG
SQGEPMAALSRIANGTHRQISIQPGDTVIFSSSPIPGNTSSVNRVINLLSEAGAEVIHGK
VNNIHTSGHGSQEEQKLMLRLMKPKYFVPVHGEYRMQKIQANLATQVGIPKENSFILSNG
DVLAVTADSARRAGHFFAGDVYVDGNGIGDIGNIVLRDRKTLSQDGLVICVATVDYENRE
LVAGPDMLSRGFIYMKESGQLLNEAQAILRDEIEELLLDTEEVLNERSLRNKITDVLGPF
LFKKTERHPMILPVILGVTEADTLE
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaaatattaaaaacaacgaaacgggcgtatttgcttttggcggtttaggcgaa
atcggtaaaaacacttatggcgttcaattccaagatgaacttatcattttggatgccggt
attaaattccctgaagatgatttactcggaatcgactacgtgatacccgattatagttat
atcgttcaaaatattaataaagtaaaagggctatttatttcacatggacacgaagaccat
attggtgggattcctttcttaattaagcaagcgaacatccctatttatgcgacgaaactt
gcgatgtctttaattcgaaataaattagaagaacacggtcttttaagagatgcgattctt
cacgaaattgatgaagacagcgtgattaaattccgtaaaacacaagtgagtttctatcgc
acgacccactcaattccagatgcatttgggattgtgattaagactcctccaggaaatatc
gtgtttacaggtgactataaattcgacttcactccagttggagaaccagcgaaccttcac
cgcatggcacaaatcggttcagaaggtgttcttgttctcttaggagacagtacaaactct
gaagtccctggatttactcaatctgaacaagttgttggaaaatcaattaaagaaattatc
caacgtgtggatggacgaatcatttttgcgacattcgcttcaaacgtttctcgtctaaaa
caagtaacagatgttgctgttgcaactggacgtaaattagctgtattcggacgtagtatg
gaagctagtttccgaacagctagagaattaggctatattcaagcgccagatgatactttt
attgatggacgagaaatcaatcaatacccttctgagaaagttattattttatgtacaggc
tctcaaggggaaccaatggcggcccttagccgtatagcaaatggaactcaccgccaaatt
tctattcaaccaggtgatacagtcatcttctcaagttcaccaatcccaggtaacacttct
agcgttaaccgagttatcaaccttctatctgaagctggtgctgaagtcattcatggtaaa
gtaaacaatattcacacttctggacatggttctcaagaagaacaaaagttaatgcttcgc
ttaatgaaacctaaatactttgttccagttcatggtgaatatcgtatgcagaagattcaa
gcaaatcttgcgactcaagtgggtattccaaaagaaaactcatttatcttaagcaatggt
gatgttcttgcagtaacagctgactcagcgcgccgagctggccacttctttgccggagat
gtttacgttgatggtaacggaattggtgatatcggaaacattgttttacgagatcgtaag
acactttctcaagatggtttagttatctgtgtagctactgttgactacgaaaaccgtgaa
ctagtggctggcccagatatgctctctcgtgggtttatctacatgaaagagtctggacaa
cttctaaatgaagcacaagctatccttcgtgatgaaattgaagaattgcttttggacact
gaagaagtactaaacgaacgttctctcagaaacaaaatcacagacgttttaggtcctttc
ttatttaagaaaacggaacgtcatccaatgattcttccagtaattttaggtgttactgaa
gcagatactttagaataa
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