Gigantopelta aegis (peltospirid snail): 121375133
Help
Entry
121375133 CDS
T07458
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gae
Gigantopelta aegis (peltospirid snail)
Pathway
gae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121375133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gae03019
]
121375133
03041 Spliceosome [BR:
gae03041
]
121375133
03009 Ribosome biogenesis [BR:
gae03009
]
121375133
03016 Transfer RNA biogenesis [BR:
gae03016
]
121375133
Enzymes [BR:
gae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121375133
Messenger RNA biogenesis [BR:
gae03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121375133
Spliceosome [BR:
gae03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121375133
Complex C
U4/U6.U5 tri-SnRNP related factors
121375133
Ribosome biogenesis [BR:
gae03009
]
Eukaryotic type
Pre-60S particles
Helicases
121375133
Transfer RNA biogenesis [BR:
gae03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121375133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
U3_assoc_6
DBC1
Motif
Other DBs
NCBI-GeneID:
121375133
NCBI-ProteinID:
XP_041358322
LinkDB
All DBs
Position
6:32021608..32052996
Genome browser
AA seq
1026 aa
AA seq
DB search
MAGYGDELFDVFEENAVNATESSGDKKDESELSVNSDSQRAEALLKTIVGKHSAENNGEE
VSTKKVKVATEESSSLEILPRIQIHRVETVEACLHEVAVPPDDEFVPLKPADGKPAKEYP
FILDPFQKEAILCLENHQSVLVSAHTSAGKTVVAVYAIAMSLRDKQRVIYTSPIKALSNQ
KYRELYEEFQDVGLMTGDATINPTASVLVMTTEILRSMLYRGSEVMREVAWVVFDEIHYM
RDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDFRPIPLQ
HYIFPAGGDGLHLVVDENGDFREENFNTAMAVLKDAGDAAKGDMKGRRGGSKANESNCYK
IVKMIMERNFAPVIVFSFSRKDCEGYAMQVSKLDFNSDEEKSLVEEVFNNAIDALSDEDK
KLPQVEHVLPLLKKGVGIHHSGLLPLLKETIEILFSEGLIKALFATETFAMGLNMPARTV
MFTSARKFDGKDYRWITSGEYIQMSGRAGRRGLDERGIVILMVDEKMSPAVGKVILKGLP
DALNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYSAIPDLIDKLKKKEEEYGKFV
IPNEDQIAAYYKIRQQLDNLGRELMQYIQKPCYLLPFLQPGRLVKVKNKEDNFGWGVVIN
FQKKMDQSGVAKDANPLYVVDVLLHVSKSNIRSQNTADVKPCPKGDRGDMFVVPVMTALL
EEISAVRLYVPQDLRPPDNRMSVLKSLMEVQKRFPDGLPHLDPIEDMGIKEKGLQEVIKK
IEAFEHRLYSHAMHKDPKLNELYSQYEQKMMVANEMKAIKSELKKKKSLLQMDELKCRKR
VLRRMGYATASDVIEIKGRVACEISSCDELLVTEMLFNGVFNDLTPPQIVALMSCFVFQE
KSNENPRLTETLSGSLRIMQDTARRIARISKEAKIELDEEIYSNSFKPNLMDVVYAWSTG
ASFAKICTMTDIFEGSIIRCMRRLEEALREMCQAAKAIGNTEMEQKISEGIQSIKRDIVF
AASLYL
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggcagggtacggcgatgaactttttgatgtatttgaagaaaatgctgtaaatgcaacc
gagtctagtggtgataagaaagatgaatcagaactttctgtaaatagtgacagccaaagg
gctgaagcacttttaaaaacgatagtgggaaaacattcagctgaaaataatggggaagag
gtttcaacaaaaaaggttaaagttgcaacagaagaaagcagttcattggagatcctcccc
agaatacagattcatagagtggagacggttgaagcttgccttcatgaggttgcagtgcca
ccagatgatgagtttgtcccactgaagccagccgatgggaaacccgccaaggagtaccca
ttcatcctggatccgttccagaaggaggccatcctgtgtctggaaaaccaccagtccgtg
ctcgtgtcggctcacacgtcagccggcaagactgtcgttgctgtgtatgcgattgccatg
tcacttcgagacaaacagcgtgttatttacacatcacctattaaggcgcttagcaaccag
aagtaccgtgagctgtatgaagagttccaggatgtgggtctcatgacaggagatgcgacg
attaatccgactgcaagcgttttagtgatgaccacagagattttgcggagcatgttgtat
cgtgggtcggaggtcatgagagaggttgcctgggttgtctttgatgagattcattacatg
agggacaaagagaggggagtggtctgggaagaaactataatattgctgcctgacaatgtg
cactatgtgtttctctcggccacaataccaaatgccaggcagtttgcagagtggatttgt
cacttgcacaaacagccgtgtcatgtagtttacacagatttccgtcctattcctttacaa
cactacatttttcctgccggaggtgatggcttacatcttgtggtagatgaaaatggtgat
tttcgagaagaaaatttcaacacggctatggcagtgctgaaagatgccggagatgctgct
aaaggtgacatgaagggcagaagaggcggaagcaaagccaatgaatcgaactgttacaaa
atcgtcaagatgatcatggagaggaactttgctccagtgattgtgttcagcttcagtagg
aaagactgtgagggatacgccatgcaggtctctaaactcgacttcaactcagatgaagag
aagagtctagttgaggaagtgtttaataacgctattgatgctctctctgacgaagataag
aaactaccacaggttgaacatgtcctgcctttgttgaagaaaggtgttgggattcatcat
tcaggattacttcccctgttgaaggaaaccattgaaatcctcttttcagaaggtctaatc
aaggctctgtttgctacagaaacatttgcaatgggtttaaacatgccagcgagaacagta
atgttcaccagtgcaaggaagtttgatggaaaagattacagatggatcacatctggagag
tacatacagatgagtggccgtgcaggtcggagaggtttggacgagcgaggtatcgtcatc
ttgatggttgacgagaagatgagtcctgctgtgggaaaagtaatcctcaagggtctgccg
gacgccctgaacagtgcgttccacttgacatacaacatggtcctcaacctgctacgagtg
gaggagatcaacccggagtacatgctggagagatccttctaccagtttcagaactactcc
gccatccccgatctcatagacaaactgaaaaagaaagaagaagagtatggcaagttcgtc
ataccgaatgaagatcaaatagcagcttattacaagattcgacagcagcttgacaacctt
ggacgagagttgatgcagtacattcagaaaccctgctacttgttgccattcctacagcca
ggcagacttgtcaaggtaaagaacaaggaggacaactttggttggggtgttgtgatcaac
ttccagaaaaaaatggaccaaagtggtgttgctaaggatgccaatcctttatatgtagta
gatgttctactccatgtgtcgaaatccaacatacgcagtcaaaacacagcagacgttaaa
ccttgtcctaaaggagacaggggagatatgtttgttgttcctgtgatgacagctttgttg
gaggaaatcagcgcagtccgactctacgtaccacaggaccttcgacctcctgataacagg
atgagtgtcctcaagtccttgatggaagttcagaaacgttttccagatgggttaccacat
ctagaccccattgaagacatgggcatcaaggaaaagggcttgcaagaagttatcaagaaa
attgaagcctttgaacatcgactttattctcatgcaatgcacaaagatcccaagctgaat
gaactgtattcgcagtatgagcagaaaatgatggttgcaaatgagatgaaagctataaag
tcagaactgaaaaagaagaagtctttactgcaaatggatgaactgaaatgtcggaagcga
gtgttgagaagaatggggtacgccacagcctcggatgtcattgaaataaaaggaagagtg
gcatgcgaaatcagcagctgtgacgagttgcttgttacagaaatgctgttcaacggtgtt
ttcaacgatttgacacctcctcagattgtggctttaatgagctgttttgtgttccaagaa
aagtccaacgagaatcctcgcctcacagaaacattatcaggatcactgagaatcatgcag
gatacagcacggaggatagcacggataagcaaggaagcgaagattgaacttgacgaagag
atctactcgaattctttcaaacccaacctgatggatgtcgtgtatgcctggagtactgga
gcttcatttgcaaagatctgtacaatgacagatatctttgaaggaagtataattcgatgt
atgcgtcgacttgaagaggctttgagggaaatgtgtcaggcagcaaaagctattggcaac
acagagatggaacaaaagatttcagaaggcatccagagcatcaaaagggatattgtgttt
gctgccagtctctatttatag
DBGET
integrated database retrieval system
