Gambusia affinis (western mosquitofish): 122819730
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Entry
122819730 CDS
T07758
Symbol
sbno1
Name
(RefSeq) protein strawberry notch homolog 1 isoform X1
KO
K26273
protein strawberry notch
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gaf03036
]
122819730 (sbno1)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
122819730 (sbno1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
122819730
NCBI-ProteinID:
XP_043952633
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Position
LG17:3666990..3688417
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AA seq
1404 aa
AA seq
DB search
MDPGQDLLLAALSESGICPNDLGLLDVDSQDVMQPSTAQQSISISALDVGVGAESVEVVR
SEPQTAVPVVTIRQHKPQPSTTTFVLNQLNQLPSLGATATKQSVSNPIKHTITVTKVVHV
ASSGLRASATPPPSSVPPSVSTLVPSNKDQIQLKDLLRPNKVKTTILKGNSLMELMKLKP
PPDIAPPVATATATGAGDANNGIKKEVFGKDATRIWIKDDIKMQNFSNALKAAGLKEEDE
HEEEEEEELGHAETYAEYMPMKLKIGLRHPDPVVETSSLSSVSPPDVWYRLSIPEEVIDR
GCLSALQLEAITYAAQQHETFLPNCDRAAYLIGDGAGVGKGRTIAGIIYENYLLGRKRSL
WFSVSNDLKYDAERDLRDIGAKNIQVHSLNKFKYGKISSKHNGSVKKGVIFATYSSLIGE
SQSGGKYKTRFQQLLHWCGEDFDGVIVFDECHKAKNVCPIGSSKPTKTGLAVLELQNKLP
KARVVYASATGASEPRNMAYMNRLGIWGHKTPFREFGNFIQAVERRGVGAMEIVAMDMKL
RGMYIARQLSFTGVTFKIEEVPLTQQYINMYNKSVRLWVSAREKFQQAANLMEAEQRMKK
SMWGQFWSAHQRFFKYLCIASKVRRVVQLAREEVQNGKCVVIGLQSTGEARTLEALEEGG
GELNDFVSTAKGVLQSLIEKHFPAPDRQKLYSLLGIDLSAKKTPSPAENAAQLEQKGKKR
KGSEAKKQPKKKPRKHGGLSGTSSEESESEESDRESGKDSDDSFKSVSSGDEDDDFNPFR
DESDEDEEDDPWLIRKEPKKGKKEKKKRRKSIDPDSIQSALLASGLGSTRPGFTASVNAP
ITPATVKTESQESCLTSQDSVELAQKMKKQLLEQLEGLAEDLPPNTLDELIDELGGPENV
AEMTGRKGRVVSNDDGSITYESRSELDVPVEILNLTEKQRFMDGEKNIAIISEAASSGIS
LQADRRVKNQRRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYVFLISELAGEQRFAS
IVAKRLESLGALTHGDRRATETRDLSRFNFDNKYGRNALEIVMKSIVKLDAPLVPPPSDF
KGDFFREIQSGLIGVGLINVEDRSGVLTLDKDYNNIGKFLNRILGMEVQQQNALFQYFSD
TLTAVIQEAKKNGRYDMGILDLGSGDEKVKKADCRKFLTPGYTTSGHVELYTVGVERGMS
WEEATHAWAEQNGPDDGFYVQMRNNRKTAILVKEVNTKKRLFLVYRPNTGRQVKLETYAD
IKKKFKKVLSEDAKQHWTEQYQSSAKICSHAYWRGNCKKASVGLLCEIGLRCRTYYVLCG
SVLSVWNELEEVLSPVSGSNVKVQIVRLRTEDGQRIVGLIIPANCVSPLINKLSTSDQSQ
QLAVQEQQKRQLLHPQSLTHVLNT
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atggatcctggacaggatttgctcctcgctgctttaagtgagagtggaatttgcccaaat
gatctcgggctcttagatgtggattctcaggatgttatgcagccttctacagcccagcaa
tccatttccatcagcgctctggatgttggtgtgggagcagaatctgtggaagttgttcga
tctgagcctcaaactgcagtcccagttgttacaatcagacagcataaacctcagccatca
acaaccacatttgtcttaaatcaactgaatcagttgccgtcactaggggccactgctacc
aagcagtcagtctccaatccaatcaaacataccatcacagtcaccaaggtggtccatgtc
gccagttcaggactgcgtgcttcagcaacacccccaccctcaagcgttcctccttcagtg
tccacgctagtgccttctaacaaagatcagattcagctgaaagaccttcttcggcccaac
aaagtgaaaaccaccattttaaagggcaacagtttgatggagctgatgaaacttaaacct
ccacctgacattgctccacctgtggcaacggctacagcaacaggcgcaggtgacgcaaac
aatggaatcaagaaagaagtgttcggcaaagatgctaccaggatctggattaaagatgac
attaaaatgcaaaacttttcaaatgctctgaaagctgcaggcctaaaagaagaggatgaa
catgaggaggaagaagaagaagagctgggtcacgcagagacatatgcagagtacatgcct
atgaaattaaagatcggcctgaggcatccggatcctgtggtggagaccagctctctgtcc
agcgtcagccctccagatgtttggtacagactgtccatcccagaggaagtcattgatcgg
ggctgcttgtcagcactgcagctagaggctatcacatatgctgctcagcaacatgagaca
ttcctacccaactgcgaccgagctgcctatttgattggagacggagccggtgtggggaaa
ggccggactattgcagggatcatttatgagaactaccttctgggcagaaagagatcactt
tggtttagtgtctctaatgatttgaagtatgacgctgaaagggatttgagggacattggt
gccaagaatatccaggtccattcactaaacaagtttaaatacggcaaaatctcctccaaa
cacaatgggagtgtgaagaaaggggtgatcttcgccacctactcatctttgataggagag
agccagtcaggagggaagtacaagaccagatttcaacaacttctccactggtgtggggaa
gactttgatggagttattgtctttgatgaatgtcacaaagctaaaaacgtttgtcccatc
ggctcctccaagccgactaagactggcctcgccgttttggagctgcagaacaaacttccc
aaagctcgggttgtgtatgctagcgctaccggagcctctgagccacgaaacatggcgtac
atgaaccggctgggaatatggggccataaaacaccgttcagagagtttggcaactttatc
caagcagttgaacgcagaggtgttggtgccatggaaatagttgctatggacatgaaactc
agagggatgtacatagccagacagttaagttttacaggcgtgactttcaagattgaagaa
gtccctctaactcagcagtacatcaacatgtacaacaagtctgtgaggctgtgggttagc
gcacgtgagaagttccaacaggctgccaacctcatggaagcagagcagcgcatgaagaag
tccatgtggggtcagttctggtccgcccatcagaggttcttcaagtatctctgcattgcc
tccaaagtccgccgggtggtccagttagccagagaggaagttcagaacggaaagtgtgtg
gtgatcggtctgcagtccactggtgaggcgagaacactggaggccttggaggagggagga
ggagagctcaacgactttgtgtcaacagcaaaaggtgtgctgcagtccctcatagagaag
cacttcccagctccagacagacagaagctttacagcctgctaggcatcgacctctctgca
aaaaaaactccctctcctgctgagaatgcagcacagctggaacaaaagggaaagaagagg
aaaggttcagaggccaaaaaacagcctaaaaagaagcctcgcaagcatgggggcctgtcc
ggtacgagttcagaggagagcgagtccgaggaatcggacagagagtctgggaaggacagc
gacgacagcttcaagtctgtcagctcaggagacgaagacgacgatttcaatccattcaga
gacgagtctgatgaagacgaggaggacgatccttggctaatcagaaaggagccgaagaaa
gggaagaaggagaagaagaaaaggaggaagagtattgatccggactcgattcaaagtgcc
ttgttagcctcggggctgggctccaccaggcccggtttcaccgcctcagtgaacgccccc
atcactcctgctactgttaagacagagagccaggaaagctgcctaacgagtcaggactcg
gtggaacttgcccagaaaatgaagaaacagctgctggaacaactggaggggttggcagaa
gatctgcctcccaacaccctggacgagctgatcgacgagctgggagggccggaaaacgtg
gcggagatgaccggtcgtaaaggtcgcgtggtcagtaacgatgacggcagcatcacctat
gagtcccgctctgagctggacgtccctgtagaaatcctcaacctgactgagaaacagagg
ttcatggatggagaaaagaacatagccatcatctcggaagcggccagctccggtatttcc
ctgcaggccgaccggcgtgtgaagaaccagaggaggagagtccacatgaccctggagctg
ccgtggagcgcagacagagccatacagcagtttggacgaacacacagatcaaaccaggtc
acagctccagagtatgtttttctcatatcagagctggcaggagagcaaagatttgcatcc
attgttgccaaaagactggaaagcctgggggctctcactcacggagaccgacgggcgaca
gaaacaagagatctgagcaggttcaactttgacaacaagtacggcagaaacgctctggaa
attgtgatgaagtcgatagtaaagctcgacgctcctctggtgcctccgccctcagacttc
aaaggggatttcttcagagagattcagagtgggctgataggcgtgggcctcataaatgtg
gaggacagatctggagtgcttacactggacaaagactacaacaacatagggaaattcctg
aaccggatattgggcatggaggtccagcagcaaaatgccttgttccagtatttctctgac
actctgacagcagtgatccaggaagccaagaagaatggcagatatgacatgggcattctg
gatctcggctcgggtgatgagaaggtgaagaaggcggattgtcgaaagtttctgacgcca
ggctacactacgtcaggacacgtagaactctacaccgtcggcgtggaaagaggaatgtct
tgggaagaagcgacacacgcctgggcagagcagaacggcccagacgatggcttctatgtc
cagatgagaaataacagaaaaacggccatcctggtgaaggaagtgaacactaagaagagg
ctgttcctggtgtacaggccaaacaccggcagacaagtcaagctggaaacatacgctgac
atcaaaaagaagtttaagaaggttctgtcagaagatgccaagcagcactggactgagcaa
taccagtcatcagcaaaaatatgctctcatgcgtactggcgtggcaactgcaagaaagcc
tcagttggcctgctgtgtgaaatcgggctgcgctgcaggacgtactacgttctgtgtggc
tctgtgctcagcgtgtggaacgaactggaagaagttctttctccagtcagcggaagcaac
gtgaaggtgcagattgtccgcctgcgcaccgaggacggccagaggatagtcgggttgatc
attccagcgaactgcgtgtctccgttgatcaacaagctctcgacctcagatcagagccag
cagctggctgtgcaggagcagcagaagaggcagctgctccaccctcaaagtcttactcat
gtcctcaacacataa
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