Gambusia affinis (western mosquitofish): 122819927
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Entry
122819927 CDS
T07758
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122819927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122819927
03036 Chromosome and associated proteins [BR:
gaf03036
]
122819927
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122819927
Coactivators
SAGA/TFTC/STAGA complex
122819927
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
122819927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
122819927
NCBI-ProteinID:
XP_043952931
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All DBs
Position
LG02:8645112..8744041
Genome browser
AA seq
1074 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESQLSGQSNSAGKADENGGAGSVAPANHHLGK
TLPAPVSTTTLEQQQQPGRWNKPEMRQEVNCKDASPDKTVTSPQLSCSSSFGEPPSSSAG
CVNATSSGIQSHGASITPLTESGVSTLASPQDSISTTFSRSAKVSQCTGEAPAEASAPRK
RVATPRRSPSARIKSLNGAAVTTRRSSITAVTDSSIISSVDPGVTPPNSTRSAINTSTFT
LSNANLPVGQSAIALDRGTPTIALHRLPSHIVASIAQNGNGTSVSALVQQGARIEPATSS
SPTGDLSKAATDTGASKTDDCQSNIVTQSQVGSVSSVINTLLPSASCAITPATTTTAAPT
TTTTVTQPLCSATTAVCATAMATTSVCGTVQTTAVTSTMSMVRPTAPSPTPALATPALSQ
PRPGVPTPQRIVAPQLIVRPSQQQTTIQLPPGFTIPQGMVLVRTELGQLVLVPQQALAQA
QAQAQAQNNISPRPAAPTTGTSFRVTTPQQSPATSQTTRPCPLTPAKMAPSPSPTPSSPA
LQASSSSSSSSSSCPALRPKGPVAPTVAVTASQQTPMVMTPQAQAPPTSQPAAQTQTSVA
AAPGAPVVSQEMQENVKKCKNFLATLIKLASHNSPSPETSKNVKALVQDLLDAKIEPEEF
TSRLQSELKSSPQPYLVPFLKKSLPALRLSLLNSQQSLTQPLQQGVKPAAGGTPPAMVAG
PAVRIRHPNSVSTTAGASVLPAGTIGHAAAMGVKTGGTVSGPVRMPMVITQSIRPQGTIG
KGAIIQAGKSPMGLPVQISGNQKNKLNDPGGGSFRDDDDINDVASMAGVNLNEESARILA
TNSELMGTQIRSCKDEAFLHPGLLHRRILETAKKFGVTEVPMEAVTFISHAAQSRLRTVV
EKVSIIAQHRIDSCKDDECYEQSADVRSQLRFFEQLERIEKQRKDEQEREILLKAAKSRS
RQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKLDSPGATPSGTEVSS
SMAGSPACSSAPSTSSRQYTRQRITRVNLRDLIFYMEQERETAHSLLLYRALLK
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcctccgaccccctggaagatatgctcttttcggaggtggatgagaaggct
gttagcgacctggtgggctctttggagtctcagctgtctgggcagagcaactccgcgggg
aaagcagacgaaaacggaggcgctggctctgtggcccctgctaaccatcacttaggaaaa
acgctcccagctccagtgagtaccacaacactagaacaacaacaacaacctggacggtgg
aataaacctgagatgcgccaggaggtgaactgtaaggacgcaagcccggataaaactgtc
acctctccgcagctgagctgctcctcttcttttggcgagcctcccagctcttcggctggc
tgtgtgaacgccactagcagcggcattcaatcacatggagcatccatcacaccgctgact
gaatctggcgtgtcaactttggcatccccgcaggacagcatcagcaccacattcagtcgg
agcgccaaggtgagccagtgcacaggtgaagcgcccgcggaggccagcgctccgaggaaa
cgcgtcgcgacgccgagaaggagcccctcggcgcggataaagagtttgaacggcgcagcg
gtgacgacgagacggagcagcatcacagcagtgaccgacagcagcatcatcagctccgtg
gacccgggcgtaactccgccaaactccactcgatcggccatcaatacttccacgttcact
ctgtccaacgcaaacctccccgtgggtcagtcggctattgctctggaccgggggactccc
accattgccttgcacagactcccgagtcacatcgtagccagtattgcccagaacggcaac
gggaccagcgtttcggcactggtccagcagggtgctcggatagagcccgccacatcctca
tctcccacgggagatctcagcaaggcggccacggacaccggagcttccaaaacagacgac
tgtcagtccaatattgtaacgcaaagccaggttggtagtgtgagctctgtaataaacact
ctattaccgtctgcttcctgcgctatcacaccagcaacaaccactacagcagctcctact
accaccaccacagtgacccagcctctgtgctccgctacaacagctgtgtgtgccaccgct
atggcgaccacatctgtctgtggaactgtccagaccacagctgtgacctccaccatgagc
atggtcaggcccacagctccctctccaacacctgccttggccacccctgcactgtctcaa
ccccgtccaggggtcccaacgcctcagaggatagtagccccccagcttattgtcagacct
tcacaacagcagaccaccattcagctcccccctggctttaccatcccacagggaatggtg
ctggtgcgcactgaattgggccagttggtgttggttcctcagcaggctttggcccaagcc
caggctcaagcccaggcccagaacaacatttccccgagacctgctgctccaacaacggga
acgtccttcagagtaacaacaccacagcagtctcctgcaacttctcagaccacaaggccg
tgccctttgaccccggccaagatggcaccgtctccctctcccacaccttccagccctgcc
cttcaggcctcttcctcctcttcttcctcctcctcctcttgtcctgcactccgccctaag
ggccctgtggcgccgaccgtggcagtgacggcttcgcagcagacgcccatggtcatgacc
ccccaggcccaggccccgcctacctcccagccagcggcacagacgcagacgagcgtcgca
gcggcccccggagcgccggtcgtgtcccaggagatgcaagaaaatgtgaagaagtgtaag
aattttctggctacacttatcaagctggcgtctcacaactctccatctcctgagacttcc
aagaacgtcaaagctctggttcaggatctgctggatgccaagattgaaccggaagagttc
accagcaggctgcagtctgagctcaagtcgtctccgcagccttacctggtgccttttctc
aagaagagcctcccggccctgaggctgtctttgctgaacagtcagcagtccctgacccag
cccctgcagcagggagtcaaaccagcagccggcggcacccctcctgccatggtggctggg
ccagctgtccgcatacggcaccctaacagcgtcagcaccactgcgggtgccagcgtgctg
cccgctgggaccatcggacatgcagctgccatgggcgtgaagacaggagggactgtcagt
ggtccggtccggatgcccatggtgatcacgcagtccatcagaccgcaaggaacgataggg
aagggagccatcatacaagcaggcaaaagtcccatgggcctgcctgttcagatctctggg
aatcagaaaaacaagctcaacgaccccggaggaggctctttcagagacgatgatgacatc
aatgatgtggcctccatggccggggtgaatctgaatgaggagagcgccagaatacttgca
accaattctgagctgatgggaactcagatccggtcgtgtaaagatgaggcctttctccat
ccgggtttgctacatcgacgaatcctggaaactgctaagaagtttggagtgacagaggtt
cccatggaagccgtgacattcatctcacacgctgcacagtctcgactccgaactgtggta
gaaaaggtttctatcatcgcacagcatcgaatcgactcctgtaaggacgacgagtgctac
gaacagtctgcagacgttcggtcgcagctccgcttcttcgagcagctggagaggatcgag
aagcagaggaaggatgagcaggagagagagatccttctgaaagccgctaaaagtcgctcc
aggcaagaggacccagagcaagctcgactgaaacagaaagctaaggagatgcagcaacaa
gagctggcccagatgagacaacgagatgcaaatctgacagcacttgctgctattggacct
agaaaaaaacgcaaactggactcaccaggggcaacaccatcagggactgaggtctccagc
agcatggccggctccccagcgtgctcctctgccccgtccacctcatctcgccagtatact
cgacagcgcatcacccgcgtcaacctcagggacttgattttctacatggagcaagagaga
gagactgcccactccctcctcctttaccgtgcactgctcaagtag
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