Gambusia affinis (western mosquitofish): 122819954
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Entry
122819954 CDS
T07758
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03020
RNA polymerase
gaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122819954 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
122819954 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122819954 (polr2a)
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122819954 (polr2a)
Enzymes [BR:
gaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122819954 (polr2a)
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122819954 (polr2a)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122819954 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
122819954
NCBI-ProteinID:
XP_043952981
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All DBs
Position
LG18:485944..500770
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGVISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKILRCVCFFCSKLLVDSN
NPKIKEILVKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEPQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSNKAFEKKFRFDCTNERALRRVLQEDVVKDVLTNAHVQSVLEKEFEKMRED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVEGVQELSKKLVI
VNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAYDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPVSPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggtgacagcgcatgcccattgcgcacgatcaagagagttcag
ttcggcgtcatcagcccagatgaacttaaacggatgtcagttactgaagggggtatcaaa
taccccgaaaccacagaaggaggacgtcctaagcttggtggccttatggatccaagacaa
ggggtcatagaacgcagtgggagatgtcagacgtgtgcaggcaacatgactgaatgtccg
ggccacttcggacacatagagctggcgaagccggttttccacgtcggcttcatatcaaaa
ataatgaagattcttcgatgcgtctgcttcttttgctcaaaactgttggtggattccaac
aacccgaagatcaaagaaatccttgtgaaatccaagggccagccaaggaagcgtctaacc
cacgtctacgagctgtgcaaaggcaaaaacatatgcgagggaggggaagagatggacaac
aaatttggaatggagccacaggagacagaggaggacattaccaaggagaagggtcacggc
ggctgcgggcgctaccagccacgcatccgacgctcgggcttggagctgtacgccgagtgg
aagcacgtcaacgaggattcccaggagaagaaaatcctcctgagtcccgaacgcgttcac
gagatcttcaagcgcatctcagacgaagaagacatcatcttgggcatggaccccaagttc
gcccgtccagaatggatgattgtgaccgtgctgcctgtgcctccgctggccgtgaggccc
gccgtggtcatgcagggctcggctcgcaaccaggacgatttgacccataagctggcggac
atcgtgaagatcaacaaccagctgagaagaaacgagcaaagcggcgcagctgctcacgtc
atcgccgaggatgtgaagctccttcagtttcacgtggccacgatggtcgacaacgaatta
ccaggcctgccgagggcaatgcaaaaatctggccgtcctctcaaatccataaagcagcgt
ctaaagggaaaagaggggcgagtgaggggcaatctgatgggcaaacgtgtggacttctcg
gcccgaaccgtcatcacccccgaccccaacctgcagatcgaccaagtgggcgtgccacga
tccatcgcggccaacatgacgttccccgagattgtcacaccctttaatatcgacagattg
caagagttggtccggagaggcaacagccagtaccccggagcaaaatacattatccgagac
aacggagacagaatcgacctgcgattccaccctaaaccaagtgaccttcatctgcaaatc
ggctacaaggtggaaaggcacatgtgcgacggtgacatcatcatcttcaaccgacagccc
acgctacataaaatgtccatgatggggcacagagttcggatcctgccttggtcgacattc
cgactcaacctcagtgtcaccaccccttataatgctgacttcgacggggacgagatgaac
ctccacctccctcagtcgctggagacccgggcggagattcaggagctggccatggtgccg
cggatgatcgtcacgccccaatccaaccggcccgtcatgggtatcgtgcaggacaccctc
acagccgttcgcaagttcaccaaaagagacgtgttcttggagaggggtgaggtgatgaac
ctcctgatgttcctgtccacctgggacgggaagatgcctcagccggctattctcaaacct
cgtccgctgtggacggggaagcagatcttcagcctcatcattccaggacacatcaacgtg
atccgcacccacagcacgcaccccgacgatgaagacagcggcccgtacaaacacatctcc
cctggtgacaccaaggtcatagtggagaacggggagttgatcatgggcatcctgtgtaag
aagtctctgggaacctcggctggctccctcgtccacatctcctacctggagatgggccac
gacatcaccaggctcttctactccaacattcagacggtggtcaacaactggctgctcatc
gagggtcattccatcggtattggggactccattgctgatgccaagacgtacctcgacatc
cagaacaccatcaagaaggccaaacaggatgtgatagaagttattgaaaaagctcacaac
aacgagctagaaccgacacccggtaacaccttgaggcaaaccttcgagaaccaggtgaac
cgtatcctgaacgacgctcgtgacaaaacgggatcctccgctcagaagtcgctgtccgag
tacaacaacttcaagtccatggtggtggcgggatccaagggctcaaagatcaacatctca
caggttatcgccgtggtgggccagcagaacgtggagggtaagcgaatccccttcgggttc
aagcaccgcacgctgcctcacttcatcaaggatgactacggtcctgagagccgaggcttc
gtggagaactcctacctggccgggctgacgccgaccgagttcttcttccacgccatggga
ggcagagagggtctgatcgacacggctgtcaagaccgctgagacgggttatattcagcgt
cgtctcatcaaatccatggagtctgtgatggtgaagtacgacgccacggtgcgaaactcc
atcaaccaggtggttcagctgcgttacggcgaggacggcctggcgggagagaacgtcgag
ttccaaaacctggcgacgttgaagccctccaacaaggctttcgaaaagaagtttcggttt
gactgcaccaacgagcgcgcgttgagacgggtgctgcaggaagacgtggtgaaagacgtg
ctgactaatgcacatgtgcagagcgtcttggagaaggagtttgagaagatgagggaggac
agagagatcctgcgggcgattttccccactggtgacagtaaggtggtgctgccgtgcaac
ctggccagaatgatctggaacgctcagaagattttccgaatcaacactcgaaccccaaca
gacctaaatcccctgcgagtggttgagggcgttcaggagctgagtaagaagctggttatt
gtcaatggtgacgatcctctgagcaggcaggcccaggagaacgccactctgctcttcaac
atccacctgcggtcgacgctgtgctccaaacgcatgacggaggagttccgcctgtccacc
gaggcttacgattggctgctgggagagatagagaccaagttcaaccaatccattgcccac
cctggtgaaatggttggcgctctagctgcccagtcgctgggagagccagccacccagatg
accctgaacactttccactacgccggagtgtcggccaaaaacgtcacgcttggtgtgcct
cgtctcaaagagttgatcaacatctcgaagaggcccaagaccccgtcgctgaccgtcttc
ctgctgggtcaggcggcacgtgacgcagagagagctaaggacatcttgtgtcgactggag
catacaacgctcaggaaggtgactgccaacaccgccatctactatgaccccaaccctcag
aacaccgtggtggccgaggatcaggagtgggtgaacgtctactacgagatgccggacttt
gatgtgactcgcatttccccgtggttgctgcgcatcgagctcgaccgcaagcatatgact
gaccgcaaactgaccatggagcagatcgcagagaaaatcaatgcaggttttggtgatgac
cttaattgcatcttcaacgatgacaacgctgaaaaactggtgctgcgaattcgaatcatg
aacagtgacgagaacaaatttcaagaggacgaggaggttgtggacaaaatggacgacgat
gtgtttctgaggtgcatcgaatccaacatgctgacggacatgactctgcagggcatcgag
cagatcagcaaggtgtacatgcacctgcctcagactgacaacaagaagaagatcatcatc
acagaggatggagagttcaaggccctgcaggagtggatccttgagacggacggagtgagc
ctcatgagggtgctcagtgagaaggacgtggatcctgtcaggaccacctccaacgacatc
gtggagatcttcacggttttgggtatcgaagctgtccgaaaagctctggagagagagttg
taccacgtcatctcctttgatggctcctacgtcaactaccgccacttggctctgctttgt
gacactatgacttgccgcggtcacttgatggccatcacgcgtcacggcatcaaccgtcaa
gacaccggacctctcatgaagtgttcctttgaggagacggtggatgtgctgatggaggcg
tcctctcacggagagtgcgacccgatgaaaggcgtgtcggagaacatcatgctcggccag
ctcgccccagcaggaaccggctgctttgacctgctgctagatgctgagaagtgcaagtac
ggcatggagatcccaacaaacatccccggcatcagcgtggcggggcccactggaatgttc
tttggctcagtgccaagccccatgagcggtatgtctcctgccatgacaccctggaacact
ggagccaccccagcctacggagcatggtctcccagtgttggaagcggcatgacccctgga
gcagcaggtttctctcccagcgcagcgtcagacgcgagcggcttctctccaggttactcc
ccagcctggtctcccacaccggggtcaccagggtctcctggaccagtcagtccatacatc
ccatctccaggtggagccatgtcaccaaactactctcccacctcccccgcctacgagcct
cgttctccggggggctacacccctcagagcccaggctactccccaacgtcgccttcctac
tcccccacttctccctcttactcccccaccagccccaactacagccccacgtctccatcg
tactcccccacttcacccagttactccccgacatctccctcctactccccaacgtctcca
tcttactccccaacgtctccctcctactcccccacttctccatcgtactctccgacgtct
ccgtcatattctccgacctctccgagctacagcccaacatcgcccagctactccccgacg
tcgcccagctactcccctacttcaccctcctactcaccaacctcaccctcttactctccc
acttctccatcctactcccccacctccccttcctactcccctacctctccgtcctactct
ccaaccagtccgagctacagccccacatcaccgaattacaccccaacatcccccagttac
tctcctacatccccttcatactctcccacatcgccctcttactccccaacctcccccaac
tacacaccaaccagtccaaactactccccaacttcaccctcttattcccctacatctcca
tcctactccccctccagtccacgctacacccctcagtcgcccacttacacacccagctcg
ccgtcgtacagccccagctctccatcgtactccccaacctcacccaaatacaccccgacg
tccccatcttacagccccagctccccggagtacacccccacctctccaaaatactcccca
acgtcgccgaagtactcgcctacatcaccgaagtactcccccacctcccctacctactcc
ccaacaactccgaaatacagccccacctcccccacctactcccctaccagccccacctac
acccctaccagccccaaatactctcccacctctcccacttactccccaacttcgcccaag
tactcacccacgtctccgacgtactcgcctactagccccaaaggctccacctacagcccc
acctcccccggctacagccccacctcccctacctacagcccagccatcagccctgacgac
agcgacgaggaaaacaactga
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integrated database retrieval system
