Gambusia affinis (western mosquitofish): 122820087
Help
Entry
122820087 CDS
T07758
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-20
KO
K16498
protocadherin delta 1
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
122820087
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gaf01009
]
122820087
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gaf04515
]
122820087
Protein phosphatases and associated proteins [BR:
gaf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122820087
Cell adhesion molecules [BR:
gaf04515
]
Cadherins
Protocadherins
122820087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
DUF6899
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
122820087
NCBI-ProteinID:
XP_043953201
LinkDB
All DBs
Position
LG02:complement(21251491..21254738)
Genome browser
AA seq
856 aa
AA seq
DB search
MFRSRYSSKRDNLWGFYILMLYTTPLSSLANFSQAKELIYKIKEGLPKGTFIGAIGVDLR
LDFTVEPPFLFSLTQKKVSEQYVNINNTTGELYTSAAEIDRETLCPYSSEEQGCFLSLDV
FVLPQQYFQLVKVKLLIEDMNDNRPKFPTDEICMSIPENTPINGRFAVEQSAFDPDLGIY
GVQTYWLVNDFGVFTLDVEENDGGELTPFLIVTDFLDRETQAEYVTDIIAEDGGTPPLLG
AATLKIAITDVNDNCPKFTESQINVTLHGNTSKGAQLARLHAFDPDLGANAQISYAYSER
VPRDTRSLFHLDKFTGGIKLARKLDFVTTTFYKLTILANGPGCIPAVATVTVYVIKVVTG
PPAVIPRYIAPEKDGVVTLKESEPAFSPIAFFTIKNIDKSKRVDCYLEGFGPFRLVPYQQ
LENEYLLETTETLDYERTQEYELILVANNTQGLIIKTFLKVQVLDENDNAPVFQQSLVEI
SIEENNSPNTFLTQLQASDPDSESRGEVIYILGGDTPGIFVVDRLTGVLTVGTSLDREEK
EQYRFIVRAVDQGTPRRESIATVVVTVLDRNDNSPCFINKDFTFFVPEXDIFMIDTGRGA
LRAKTSLDREQQGTYQLWIEAADGGVPALSSVTMVTVLLLDVNDNPPVVLFPQSNQSFML
VLPNTTPGTSIAEVYAVDKDTGMNAVIAYSIIKRKGGDPGSFAIDPETGNITLKRELSSR
GLYSLLVKVSDHGQPEPLYSTVMVNFFVNETVSNESYIQSLLTRDVDIEVEEKPWYISQM
TDGPERYELFPCRPILISLSVACLGLFALVLILISYICCKRFKKIRKKRSEVEVPLKLKN
GSTNFLNRKLRQMSNI
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgttcaggagcaggtactccagcaaaagagacaacctatggggtttctacatccttatg
ttgtacaccacccccctctcctctctggcaaatttcagtcaagcaaaagagctcatctat
aagataaaggagggattacccaaggggactttcatcggggctattggagtggacttacgt
ttggatttcacagttgaacccccctttttattcagtctcactcaaaagaaggtcagtgag
cagtatgtgaacataaataatacaactggggagctttacacatccgctgctgagattgac
agggagaccctgtgtccttacagctctgaggagcagggatgtttcctttcactggatgtg
tttgtgttgcctcagcagtactttcagcttgtcaaagtaaagcttttaattgaagacatg
aatgacaacaggccaaagttccccacagatgaaatctgcatgtctatcccagaaaacaca
ccaataaatggccgttttgcagtggaacagtctgcttttgacccggacctggggatttat
ggagtgcagacctactggctggttaacgactttggtgtgttcactctggatgtagaggag
aatgatggaggtgagctgacaccattcctcattgtgacagactttttagacagagagacg
caagctgaatacgttacagatatcattgcagaagatggagggacccctccccttcttgga
gcagcaactttaaaaattgccatcacagatgtaaatgacaactgccctaaatttacagag
tcacaaattaatgtcactctgcacgggaataccagcaaaggggcacagttggcacgtttg
catgcttttgaccctgaccttggtgctaatgcacagatcagctacgcttacagtgaacgt
gtgccaagggacaccaggagcttgttccatttggacaaatttacaggggggatcaagcta
gccaggaaactagactttgtcacaaccacattttacaaactgactattctggccaatgga
cctggctgcatccctgctgttgcaactgtaactgtttacgtcatcaaagtggttacagga
cctcctgctgtcatacctagatatattgcacccgagaaggatggagtggtgactttaaag
gagtctgagccagctttttctccaatagcattttttactatcaaaaacatagacaaaagc
aaaagggtggactgttatttggaagggtttggtcccttcaggcttgtcccataccagcag
ttagagaatgagtatttactagaaacaacagagacattggactatgagaggactcaggaa
tatgagctaattttggttgctaacaatactcaaggtctaatcataaagactttcctaaag
gtgcaggttttggatgagaatgacaatgcaccagtgtttcaacagtctttggtggaaata
tcaattgaggaaaataattcaccaaacacatttctaactcagctccaagcatcagaccca
gacagtgaaagtcgaggggaggtaatctacatccttggtggggatactcctgggattttt
gttgtggatcgtctgacgggggttctgactgttgggacatctcttgacagagaggaaaaa
gaacaatatcggttcatagttagagcagtagatcaggggacgcccaggagggagtcaatt
gctacggtggtggtgactgtactggatcgcaatgacaacagtccatgtttcatcaacaag
gattttaccttctttgtgccagagnnagacatttttatgatagacactggccgaggtgca
ctgagggccaagacatcccttgaccgtgagcagcaaggaacgtaccagctgtggattgag
gccgccgatggtggggtgccagcgctttcctctgttactatggtgactgtcctcttgttg
gatgtgaatgacaacccgccagttgttcttttccctcagtctaaccagtccttcatgctg
gtacttcctaatacaacacctgggacatcaatagcagaagtgtacgcagtggacaaagac
acagggatgaatgctgtgattgcctacagtatcattaaaaggaaagggggtgatccaggg
tcatttgccatcgacccagaaacaggaaacataacattaaagagggagctcagcagcagg
ggactttacagccttctagtgaaagttagtgatcacggtcaacctgaaccgctttactca
acggtcatggttaacttctttgtcaatgaaacagtgagtaatgagagttacatccaaagt
ctgctgaccagagacgttgacatagaagttgaagagaagccctggtacatcagtcagatg
acagatgggccagagaggtatgagctgttcccctgtcggcccatcctcatcagtctttca
gtggcgtgtctcgggttgtttgccctggttctcatattgatatcatatatatgctgcaag
agattcaaaaagataaggaagaaaagatcagaagtggaagtacctttaaaattgaaaaat
ggctcaacaaactttctgaacagaaaactcaggcagatgtcaaacatctga
DBGET
integrated database retrieval system
