Gambusia affinis (western mosquitofish): 122820128
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Entry
122820128 CDS
T07758
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122820128 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
gaf04091
]
122820128 (frem1a)
Lectins [BR:
gaf04091
]
C-Type lectins
Lecticans
122820128 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
122820128
NCBI-ProteinID:
XP_043953238
LinkDB
All DBs
Position
LG18:complement(1972285..2026392)
Genome browser
AA seq
2179 aa
AA seq
DB search
MGFPGHTLVLSLLVVLLLLLTCSSLCSLVKVNKGLKVKRGQSIYLQEGDLQFHVPAKKDA
CKVEVVLNEPITQRVGKLVPQVFDCHYQSDEVKYVHNGCPLLKEDTVKLRLYSFTETNTY
MESFTLLVDIIAPECNIINIGPKFLQVSEVYGLSNAIEGNVVSFHYERKPSLECSIHLSP
QETHLPAHGKLVTGDPERATKRGDEPESFIYLRQQLDDKARRMYASEDCLKGLKLVTVKN
VPCDDFLLMGIKYQHIDPPSPDVDYIAIRLDLKDTRSGSIYQSEQGWIPVRIAGGMPNQP
PKPSFMSMFILEVDQFILTPLSIATLDAEDEETPKQLLVFNITKHPEEGFITHLSDHTRP
VSSFTWPDLNDMLIAFQPPNSSHTQRRIYEVEIEVYDFFFVNSSPVTIHTSVRNADTNAP
RVSWNMEPPSLSTSQNVSLANCGSTVPPEPGTVSDLTAAEAVEGRSSAPGLTLLEGQSRP
IMWDQLQIVDNDNLNVRVVIVDGLQHGHLTVRGGKGFMFTINDIRAGVVCYHHDDTDSTK
DFIIFRITDGHHQTRHKFPIKILPKDDSPPFLITNMLVEVSKGQTTLLRGSTLKASDMDS
SDDNILFNITRLPQAGEIMKIPGPGLTSYPVSHFLQKDLSQSIMYYRHFGNEVIDDLFEV
VLSDFHDPPNLSEPQVVVVHIESVPDQPPKEVPGSTRYLVIKETQVAHITRQQLHFVDQE
SPDSELTYTVTTPPFYTDHYSGPDAGRLFLVDSVPKFTKDSNTPVLRLFTQHAVNFMKVA
YMPPIMDIGPYPRHIQFILSLTNHLGKTVTGLCFNITLLPVDNQPPQVVTKPLTVDEGGE
HILSPEHLHLSDVDSVPEALHVELQREPERGLLYFGGHPLTLGQNFTLQDLIRRKVRYNH
DGSETTEDTIVLTATDGINSVSFVLPVKVTPINDELPVMVTGLKPVLRCPEGEEIFITSE
YIFATDADSDNSSLGFLIARQPYHGVVLRNAVVVDRFVQSDITAGLISYRHTGLEIGVSP
LHDTITFVISDGEIKTSASCCGGETAIRNKGSTQPWDSLPVYDLHITVFPVDNQPPSLAT
GDIFTVDEGGTSLITAAHLKASDRDTVRDKLVVRLISPPQFGYVENVLPSPGFEKSNRGI
SIVSFLYKDITEGHINYVQSRHQKMEPTADQLMLCVSDGKHNSANIPFYIIINPTNDEIP
EFMAHNITVQEGEMKHLDSSVFHAMDLDIPNNALLFSVVRPPCHGSIICHKTGNPMSKSQ
EPNLSSPVVDFTMTDIKNGLDLVYLHDNSETMKDSFIIQLTDGKHTLQRQVMVEVVPVND
EEPHVIRNNGLEVEPGEAKVISSITLFAKDKDTPSTEIMYIFERVPTQGTLQLKEANKWV
TLTPGRRCTQDMVDTNLLRYKHTGHHAIKTQDFFVFHLMDGKNQSPPQHFQIFVKELEKE
NIAIFVKPVNVSRGERVVLTTDVLLATDGTDKPEELLYVITNPPAHGHLEYIKHPGVIIS
TFSQMDIGANLVAYIHDNQASKATESFQFVISNGKTSRNGSFELCVEIVDRVLPSLTSIK
GLQVPQGSAMILGPELLSLSDPDTPPRALTFVLRQPPQYGKLERAGVTLTAGSNFTQKHI
KELEVTYRHDGGPSQIDRFAFTASDSSSRGFLLDGRLQTEPVFFTIQIKPLDKSSPEVIR
LVPLWKPELLPDGRYVIFVTSQELKAQDSGSREEELIFCVVRPPYFGYLENITTGMFVSK
CFPQIELNKRILAYIINSYGEFLSDSLEFKVSDPLGNMGPSHILEFRWSKVEFSLPEFSS
CEEQGKISLDIIRKGNLAESSYVTVKVIEGTANAGKDFRTNPSSLIQFDPGVAKRSWQTE
IVEDHIEEADERFEVLLVSPEATVIGRISKAELTIRDSGNGQCWPNQDQQAPLLGGKEIR
SDAYPQHGSIRLEKLPLATQSVIWSRGDSISSPREHLPKKTLRVVSNLKSIAPSSIFHNE
TDVIYTYHGIMQMLVHDDTSPSRKSRKANVRVVSREPQHQVPGLLTEAKSNTPKDELKAQ
MKGRAGGHMCPQGWTFQGGRCYIVSTKPKLTWTAANRACRERFMGNLASVLSKSDMDWLW
DFSGRKPFWIGLNSRESEEWWEWAGGEPVSYTNWRKNPSRSKMKRNRKCVLVWRNSKWQI
RDCKRSRAHRFVCSVKPWG
NT seq
6540 nt
NT seq
+upstream
nt +downstream
nt
atgggttttccaggtcacacactggtcttgtccttgcttgtggtgcttttgctattactg
acctgttcatctctttgttcgctagtaaaagtcaataaaggtttaaaggtgaaacgaggt
cagtcaatctaccttcaggaaggggatctgcagttccatgttcctgctaagaaggatgca
tgcaaggtggaagtagtattaaatgagcccattactcaaagagtgggaaaacttgtgcca
caggtgtttgactgccattatcagtctgatgaagtaaagtatgtccataatggctgtccc
ttgttaaaagaagatactgtcaagctccgcctgtatagcttcacagagacaaatacatac
atggagtcgtttaccctccttgtggacatcatagcgcctgaatgcaacatcattaatata
ggtcccaaattccttcaggtctctgaagtgtatggcctctccaatgctattgaaggcaat
gtggtttccttccactatgaaagaaaacctagtctggaatgcagcatccacctcagtcca
caggaaacccatcttcctgcccacggcaaactcgtcactggagacccagagagagccacc
aagagaggcgacgagccggaaagttttatctacctacgtcagcaactagatgataaagcc
agaagaatgtatgcatctgaagattgccttaagggcctgaagctagtgacagtcaaaaac
gttccatgtgatgacttcctcctgatgggcataaagtatcaacacatagatccaccctct
ccagatgtcgattatattgcaattaggcttgaccttaaggacaccaggagtggcagcata
tatcagtctgagcagggctggattccagtcaggatagcaggaggaatgcccaaccagcct
cccaaaccatctttcatgtccatgtttatcttggaggtcgaccagtttattctcactccc
ctctccattgcaacactggatgctgaagacgaggaaactccaaaacaacttctggttttt
aacatcactaagcaccctgaggaaggctttatcacccatctgtctgatcacactcgtcca
gtctcctcctttacatggcctgatctaaatgacatgcttatagcatttcaacccccaaat
tcttcacatacccaacgaagaatttatgaggtggaaattgaagtttatgatttcttcttt
gtgaatagctcaccagtaactatccacacatctgtaaggaatgcagacacaaatgcacca
agagtgtcttggaacatggaaccaccatccctctccacttctcaaaacgttagcctagcc
aattgcggctctacggtgccaccggaacctggaactgtgtcagatctgacggctgcagag
gcggtggaagggcgatcttctgccccaggtcttactctgctggagggtcagtctcgtcct
ataatgtgggaccagttgcaaatcgtggataatgacaacctgaatgttcgtgtcgtcatt
gtggatggtcttcagcatggacacctaactgtaagaggtggaaagggcttcatgtttaca
atcaatgacataagagcaggtgttgtctgttatcaccatgacgacaccgactccacaaag
gacttcatcattttccgaatcacagatggccatcatcagacccgacataagttccccatt
aagattcttcccaaagatgacagccctccattcctcataactaacatgctggtggaagtc
tcaaagggccagacgaccctgctcagaggttccaccctcaaggcttcagacatggactcc
agtgatgacaatatcctctttaacattactcgtctcccacaggcaggagagatcatgaaa
atccctggaccagggctgacaagctaccctgtcagccacttcctccagaaggatctttca
cagtccatcatgtactacagacactttgggaacgaggtgattgatgacttattcgaggtt
gtgctgtctgatttccacgatcctcctaacctttcagaacctcaagtggtagtggtgcac
atagaatcagttccagaccaaccaccgaaggaggttcctggttccactcgatatcttgtg
atcaaagaaacacaagtggcccatataacacggcaacagcttcattttgtagaccaagag
tcaccagacagtgagcttacatacaccgtaacaactccacctttctacactgatcattac
agtggtccagatgcagggaggttattcctggtcgacagcgtacccaaatttactaaagac
tccaacacaccagttctcagactcttcacacaacatgcagtgaacttcatgaaagtggct
tacatgcctcccatcatggacattggcccttatcctcgacatatccagtttattctatct
ttgacaaaccatctgggcaaaacagtaactgggctctgttttaatattactctactgcca
gtggacaatcagccaccacaggttgttaccaagcctttgactgtggatgagggaggagaa
cacatcttgagcccagaacacttgcacctgtcagatgttgactctgtaccagaagccttg
catgtggagcttcaaagggaaccagaacgggggcttctctattttggtggtcatccactt
acactaggacagaactttactctgcaagacctgataaggcgtaaagttaggtacaatcat
gatggctcagaaactacagaagacaccatagttctcactgcaacagacggcattaattca
gtcagttttgttctgcctgtaaaggtaacgcccataaatgatgagctcccagtgatggtt
actggtttgaaaccagttctcaggtgtccagaaggagaagaaatattcatcacttcagag
tacatctttgccactgatgctgatagtgacaacagcagccttgggtttctgattgcccgg
cagccttaccatggggtggttctgcgaaatgctgttgttgtagatcgcttcgtccaatca
gacatcacagcaggcctcatctcttacaggcacacggggttggagattggagtatctcct
ctacatgacaccatcacatttgtcatttctgatggagaaataaaaacgtcagcttcgtgc
tgcggtggggaaactgccatcaggaataaaggcagcacccagccatgggacagtcttcct
gtctacgacctccacatcacagtgtttcctgttgacaatcagcctccttcacttgcaaca
ggtgacatttttacagtagatgaaggtgggacttcccttataactgctgctcatttgaag
gcctctgacagggacacagtccgtgacaagcttgttgtcaggctgatttctcctccccag
tttggttacgtagaaaatgtcctccctagtcccggctttgagaaaagcaacagaggcata
agcatagtttcctttctctacaaggacatcactgagggtcatataaactatgtacagtcc
agacaccagaagatggagcccacagctgaccagctcatgctttgtgtctcagatggcaag
cataattctgctaacatccctttctatatcataattaacccaacaaatgacgaaatccca
gaatttatggcacacaatatcacagtacaagagggagaaatgaagcacctggactcatca
gtgttccatgcaatggacctggacatccctaacaatgctttgcttttctctgtggtcaga
cctccttgccatggcagcatcatctgtcacaagactggaaacccaatgtctaagagtcag
gaacccaacctatcgtctcctgtggttgactttactatgacagatattaaaaatggtttg
gatctagtgtatctgcatgacaacagtgaaaccatgaaagacagttttataattcagctg
actgatggcaaacatacgctccaaagacaggtgatggttgaagtggtgccagtgaatgac
gaagagcctcatgtgatcaggaacaatggactggaggtggaaccaggagaagccaaagtt
atatccagcattacattgtttgcaaaggacaaagataccccctccacagaaatcatgtac
atttttgagcgtgttccaactcaaggaacacttcaacttaaggaagccaataagtgggtg
acacttacacctgggaggagatgtacccaggacatggtggacacgaacctgctacgttac
aaacatactggccatcatgctattaaaacacaggacttctttgttttccacctgatggat
ggaaagaatcaatcaccaccacagcactttcagatttttgtcaaagagctggagaaagaa
aacattgccatctttgtgaaaccagtaaatgtcagccgtggagagcgtgtcgttctcacc
actgatgttctgctagccacagatggcacagacaagccagaggagcttctatatgttatc
accaacccacctgctcatgggcacttagagtacatcaaacatccaggagtgatcatctcc
accttcagccaaatggacattggagcaaaccttgttgcttatatccatgacaaccaagcc
agcaaagcaacagaaagctttcagtttgttataagtaacggtaagactagccgaaatgga
agctttgagctgtgtgtggaaattgtggatcgtgttctgccatcgctaacatccatcaaa
ggtctccaggtcccacaaggttctgccatgatccttggtccagaactcctctccttatct
gaccctgacactccacccagggctctgacttttgttctgcgacagcctccacagtacggg
aagctggaacgagctggtgtcacactgactgctggctcaaacttcacacagaaacacata
aaggagctggaggtaacatatagacatgatggaggaccatcacagattgaccgatttgct
tttacagcatccgactcctccagtcgaggctttctgctagatggacggctgcaaacagag
cctgtgtttttcaccattcagatcaagcctttggataaatcttcaccagaagtaataagg
ctagtcccactttggaaaccagagcttttaccagatggcagatatgtgatttttgtgact
tctcaagagctgaaggctcaggatagtggtagcagagaagaggagctgatattctgcgtt
gttcgtccaccatattttggctaccttgaaaacattaccacaggtatgtttgtgtcaaag
tgtttccctcagattgaactgaacaaaagaattttagcctatattatcaattcgtatggt
gagtttctgtcagacagcctggagttcaaagtgtctgatcctttaggtaacatggggccc
tctcacatacttgaattccgatggagtaaggtggagttttctcttcctgagttctcgtca
tgtgaggagcagggaaaaatctccctggacatcattcgaaaaggaaacttggcagaatca
tcatatgtcactgtcaaggtgattgaagggactgcaaatgctgggaaagattttcgtaca
aatccttcctccctgatccagtttgatccaggagtggcaaagcgaagttggcaaactgag
atagttgaagaccatattgaggaggctgatgaaaggtttgaggtgttgctagtttctcct
gaagccacagtaattggtagaatcagcaaggctgaactcacaatcagagactcaggaaat
ggacaatgctggccaaatcaggatcaacaagctcctcttctaggaggaaaagagattcga
tcagatgcatatccccagcatggatccattcgtctggagaaacttcctcttgctacacaa
tctgtcatatggagcagaggagacagcatctcatcaccacgagaacatctccctaagaag
acactcagagttgtgagcaatctcaaatctattgcaccttcatcgatattccacaatgag
acagatgtgatttacacatatcatggaattatgcaaatgctagtacatgatgatacgtcc
ccatctagaaagagcaggaaggcaaacgtccgggtggttagcagggaaccacagcaccaa
gtacctggacttcttactgaagcaaagtccaacactccaaaagatgaactgaaagcacaa
atgaaagggcgagcaggaggacatatgtgtcctcagggctggacttttcaaggaggacgt
tgttacatcgtcagcactaagcccaagctcacatggactgcagctaacagggcctgcaga
gaaaggttcatgggaaatcttgcaagtgttctgtctaaatctgacatggactggttgtgg
gacttcagtggaagaaagcctttctggataggtctgaacagcagggagagtgaagaatgg
tgggagtgggcgggcggtgagcctgtcagctatactaactggaggaagaacccctctcgc
tccaaaatgaagagaaacaggaagtgtgtgctggtgtggagaaactccaagtggcaaatt
agagactgcaagaggagcagagctcatcgcttcgtgtgctcagttaaaccttggggatga
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