Gambusia affinis (western mosquitofish): 122820619
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Entry
122820619 CDS
T07758
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gaf00536
]
122820619
Glycosaminoglycan binding proteins [BR:
gaf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122820619
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122820619
NCBI-ProteinID:
XP_043954119
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Position
LG18:complement(16404226..16695751)
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AA seq
679 aa
AA seq
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MEKEVKRHYRTTALNIISSLCSVASIAFCVHLSISAADIRSRVVGLESGTSERTFIQVRG
YSMEDFNSLLQQRVDELLSQRSYENFAKIRTARQASAECNCPPGPPGKRGRRGRDGEPGP
PGPPGPQGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGP
PGPRGPPGDTGKDGPRGLPGLPGDPGQPGEIGLMGLEGPQGPKGTLGSPGIPGTNGQKGD
VGIPGQDGIPGAKGEKGEQGEKGDMGEDGPKGDMGEKGDAGSSAAGIKGEPGEPGRSGQK
GEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGEKGDHGPAGKGDRGEIGPAGPKG
SQGESGMPGPKGSKGDTGDKGDLGSIGPRGPPGQKGDRGATEIIDYNGNIEEALQRITTI
TVTGPPGPPGPIGPPGFKGDRGLPGLPGLDGERGYKGSKGDMGMPGASGEKGSTGLPGLP
GINGAKGDKGDPGLPGPQGPSITGPPGPPGPHGPSGPMGPHGFPGPKGEPGLHGLKGMRG
EPGHKGDRGHMGLPGASGLDGKPGIRGTDGPPGPAGPAGPKGDIGEKGAPGEPGPRGPYG
LPGAAGTPGLDGLPGLKGDKGDDGGRGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGP
DGLPMPGCWQKGVTPWLVA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagaagtgaagcgacactatcgcacgacagcgctgaacatcatctcgtcttta
tgttcagtggcgtccatcgcgttctgcgtccatctgagcatcagcgcggcagacatcagg
agccgagttgtgggtttggagagcgggacgtcggagcgcaccttcatccaggtccgcgga
tactccatggaggatttcaattctctgctgcagcagagagtggatgagttgctttctcag
cgctcttatgagaatttcgccaagatcaggacggcaagacaagcctcagctgaatgtaac
tgccccccaggacctcctggtaagagaggaaggagaggccgcgacggagaacctgggcct
cctggtcctccaggtccacagggagaaaagggagatcaaggtgaccagggaccacggatg
gtcttcccaaagatcaatcatggctttctttccgctgaccagcagctcataaagcgtcgg
ctgattaagggagatcaaggccaggcaggaccacccgggcctccaggcccacctggccct
ccaggacccaggggccctccaggggacactggaaaggatggacccagaggtttgccaggt
ctaccaggtgatccaggccagccaggagaaattggacttatgggacttgaggggcctcaa
gggccaaagggtacactggggtctccgggtatccctggaacaaatggacagaagggagat
gttggcatcccaggacaggacggaatcccaggggccaagggtgaaaagggagaacagggt
gaaaagggcgatatgggtgaagacggaccgaaaggtgacatgggcgagaagggtgatgca
ggctcctctgcggcgggcatcaagggcgaaccgggagaacctggacggagtggacagaag
ggagagccaggacttccagggctgcctggactcccagggataaagggtgagccaggattc
ctcggcccccagggagaaccaggacttccaggactccccggaactaaaggcgagaaaggt
gaccacggaccagcaggaaagggtgaccgaggagaaatcggacctgctgggccaaagggt
tcacaaggagaatctggtatgcctgggcctaaagggtcaaagggggacactggagataaa
ggagatttgggatctattggcccaagaggtcctcctgggcagaaaggagacagaggagcc
actgaaatcatcgactacaatggaaacatcgaagaagctctgcagaggattaccactatt
acagtcacgggtcctcctgggccacccggaccaataggaccaccaggctttaagggagat
cgtggtctgcctggtcttcctggacttgatggggagagaggttataaaggttccaaggga
gacatgggaatgcccggagcgtcaggggagaaaggaagcactggtttacctgggttacct
ggcattaacggagcaaaaggagacaaaggagatccaggacttccaggtccacaaggtcca
tctataactggccctccagggccaccgggaccccacgggccctcgggacccatgggacct
catggcttcccggggcctaagggagaacctggtttgcacggactaaagggcatgagagga
gaaccgggacacaaaggagaccgtggacacatgggtctccctggagcctccggcttggac
ggcaagcccggaattaggggcacagacgggcctccgggtccagctggtccagccgggccg
aagggtgacatcggtgagaaaggtgcaccaggtgagccgggacctcgaggaccttatgga
ctgcctggagccgccggaacgccaggtttggatggtttacctggattaaaaggagataaa
ggcgacgatggggggagaggagaaaagggggagaagggaaagaagggcaaaaaagggcct
aagggcgagaaaggagaacagggtgccccaggattagatgcaccctgcccattgggtccg
gatggattaccaatgcctggttgctggcagaagggagtcacaccgtggcttgtagcctga
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