Gambusia affinis (western mosquitofish): 122820724
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Entry
122820724 CDS
T07758
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04510
Focal adhesion
gaf04512
ECM-receptor interaction
gaf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122820724 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122820724 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122820724 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gaf04147
]
122820724 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
gaf00536
]
122820724 (col4a5)
Exosome [BR:
gaf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122820724 (col4a5)
Glycosaminoglycan binding proteins [BR:
gaf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122820724 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122820724
NCBI-ProteinID:
XP_043954240
LinkDB
All DBs
Position
LG18:complement(8816995..8872150)
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AA seq
1687 aa
AA seq
DB search
MTRGLRRLRQPAWVVICLVLYATIQLSDSAACNGCGGSKCDCSGVKGEKGERGFPGLTGQ
PGVPGFPGPEGPIGTRGEKGSDGPLGPSGPKGIRGPPGLPGFPGTPGLPGLPGQDGAPGP
RGVPGCNGTKGEPGFPGSSGIPGRQGFPGPPGLPGEKGDRGDVFSTNNFGPRGAVGLPGL
PGSPGSPGPIGLPGPTGPPGIQGYQGVPGPPGPPGPKGNMGLNFEGPKGDKGDQGLPGPP
GPPGPGQGEQIRPPPTEIQRGDKGDPGPPGPPGDPGNPGPPGPYGGQKGEKGEPGEPGKR
GKSGKDGDPGAPGYTGLRGEPGSPGLTGRDGERGEKGDRGFPGPPGPVIRPTNGVLVGPK
GEPGASGPPGAKGERGPTGFSGPPGSPGVPGIGGSGPPGPPGYPGDKGQKGDPGSPSIVL
PGPPGRQGNPGNPGPQGPPGPPGYSSPIDNCLPGDPGPPGIQGLKGYPGEQGQKGQKGET
CVNCIDGGNPIPGPPGPPGPPGYPGSPGPQGFKGEMGFRGTTGLSGPPGNPGPVGPQGSP
GEKGDPGDTFGISVKGEKGDSGFPGPPGLPGLDGRPGRDGAPGPPGPKGAPGPLLLKGER
GPPGDTGPPGLPGDRGPPGGPGYGSPGPPGEKGDQGSSGQPGIPGQQGQKGEQGPAVGEK
GQPGPIGMDGNPGPPGPPGPRGQDGQPGLTGLPGSKGEPGQPGIGLTGPPGVKGFPGIPG
QPGAPGKVGRPGIDGPPGPPGYAGPKGDAGFGLPGPQGPPGQPGAKGYPGQKGDRGFPGG
PGGPGRPGFDGGPGMKGEPGAQGQRGPPGPPGISTGGVQGPPGPPGPPGPIGPQGYTGGI
GEKGDPGPPGLDIPGSPGDRGSPGYPGPPGPIGVPGPPGGPGRDGPPGFTGQKGDMGPMG
PPGPPGGPGPQGGPGEPGLKGEPGFSGSNGIPGGPGSKGEKGDPGPPGLPGSTGPIDLRG
AKGDPGAPGLPGPPGPKGIAGLAGDPGSPGQDGRPGSPGGPGLKGEPGAPGSPGGPGPQG
QKGAMGDMGIPGPLGSKGVAGPQGRPGSPGQPGPAGLQGPKGDPGSAGVGPPGPPGQKGD
RGQPGYQGSPGVKGGPGAPGLPGLPGLPGDKGDIGPAGFQGPAGIPGPKGLDGGPGPPGL
TGAPGRPGETGRIGPPGPVGEKGQPGRDGIPGPAGFKGEPGSPGFAVPGPPGIQGLPGEK
GDPGPPGPPGGTGYSGQKGDSGSPGPPGRPGVSGPPGPPGQSFQGPKGNQGPPGPPGRSG
PAGPPGAPGPVGPRGLPGSGGVKGEKGNPGNPGQPGQPGEKGELGFSGPPGPAGGPGGPG
PKGDIGFTGIAGFPGTKGDRGLPGPIGPPGDPGSEGPPGPPGEPASSVPIDYVKGERGPP
GPRGSPGATGPPGPTGPPGSSGAPGPSGEPGSPGPPGFNGPPGRKGDTGPAGPPGQKGNP
GPPGSDGPQGPPGLPGSGSGAHGFLLTRHSQSEITPECPFGTNFIYDGYSLLYVQGNERA
HGQDLGTAGSCLRRFSPMPFMFCNINNVCNFAARNDYSYWLSTLKPMPMSMEAVTGESIK
PYISRCSVCEAPAMVIAVHSQTIQIPSCPANWRSLWIGFSFMMHTSAGAEGSGQALASPG
SCLEDFRSTPFIECHGRGSCNYFSNSYSFWLATVEKLDMFKKPQSETLKAGNLLTRVSRC
VVCMKAT
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atgactagaggcttgaggcgcctgcgacagcctgcctgggttgtgatttgcctcgtactg
tacgccaccatacaactatccgactctgcggcttgcaatgggtgtgggggctccaagtgt
gactgcagtggagtgaaaggagaaaagggggagaggggtttcccaggtcttaccggacag
ccaggggtcccagggttccccggacctgagggaccaatcggaactagaggagagaaggga
agtgatggacctttgggaccatctggtccaaaaggaataagaggaccgcccggattgcct
ggatttccaggaacgccaggacttccaggtctgccaggacaggacggagccccaggcccg
aggggagtgccgggttgtaatgggacaaagggtgaacctggttttccaggaagttcagga
atacctggacgacaaggatttccaggtccacctggtctcccaggagaaaagggagaccgt
ggagatgtgttttccaccaacaattttgggccaagaggagcagtcggtttgcccggattg
ccagggtctccgggcagtcctggacccatcggtttaccaggcccgactggccctccagga
atccaaggctaccagggtgttccaggtcctccaggtcctcctggacctaagggaaacatg
ggtttgaactttgaaggccccaaaggagacaagggtgatcaaggcttgccgggacctccc
ggtcccccgggacccggtcagggggaacagatcagaccaccaccaacagagatccagaga
ggggacaagggtgaccctggccctccaggtccaccaggtgacccaggcaacccaggtcca
cctggtccctatggtggccagaagggagagaaaggagaaccaggagaaccaggaaaacga
ggaaaatccggcaaagacggagatccaggagctccaggatacacaggactccgaggagag
cctggaagtccaggtctcacaggccgagatggagagagaggagaaaaaggcgacagagga
tttccgggacctccaggaccggtaattcggcctacgaatggagttcttgttggtccaaaa
ggtgaacccggtgcttctggacctcctggagctaaaggagaaagaggaccaacaggtttc
tcggggcctccgggttcaccaggagttccaggcataggcggcagcggccctccaggtcct
ccaggttaccctggagacaaaggtcagaagggagaccccggcagtccttccattgtcttg
cccggtcccccaggacgtcagggaaatcccgggaatcctggtccacaagggccgcctgga
cctcccggctatagttcaccgatcgataactgccttcctggagatcctgggcctcctgga
atccagggtctaaaaggttatcctggagagcaaggccagaaaggtcagaagggagaaacc
tgtgtgaactgtattgacggaggcaatcctataccggggcccccagggcccccaggaccc
ccaggctacccaggctctcctggcccgcaaggtttcaagggagaaatgggttttagagga
acaacaggccttagtggaccccctggtaatcctggtcctgtaggtcctcaaggttccccc
ggagagaaaggagatcctggagataccttcggaattagtgtgaaaggagagaagggtgac
agtggtttccctggaccacccggtctgcctggcctggacggtcgacccggtcgtgacgga
gcgcctgggcctcctggccccaagggagctcctgggcctctgctcttaaaaggagaacga
ggtcctcctggtgacacaggtccgcccggcctcccaggagacagaggtccaccgggcggt
cctggttatggaagcccaggtccaccaggggagaaaggtgatcagggcagctcaggacag
cctggcattcccggacaacaaggtcaaaaaggcgaacaaggtccggcggtcggagagaag
ggtcagccaggacccatagggatggatggcaacccagggccgcccggtccaccaggtccg
cgaggtcaggatggacagcctggtttaacaggtttgcctggatcaaagggtgaaccagga
caaccgggcatcggccttacaggtcctcctggagtgaagggattcccgggtattccgggc
cagccgggagcacctggaaaagtagggagaccgggaatagatggacccccggggccacca
gggtatgctggaccaaagggtgacgcaggctttggacttcctggtcctcagggtccacct
ggtcaaccaggagctaaaggataccctgggcaaaagggggatcgtggtttccccggcggc
ccaggtggaccagggcgacctgggtttgatggcggaccaggaatgaaaggggagcccggc
gcacaaggccaacgtggacctcctgggccccctggaatctcaacaggtggtgtacaaggt
cctccaggccctcctggacccccagggccaatcggaccacaaggatacacaggaggaatt
ggagagaaaggagacccaggtccaccaggcttagacatccctgggtcaccaggtgacaga
gggagtcctggttatcctggcccccctggaccaataggagtcccaggaccccctggagga
cctggaagggacggcccacctggattcacaggtcagaaaggtgacatgggtccaatggga
cctccaggaccaccggggggacctggccctcaaggaggacctggtgaaccaggtcttaaa
ggtgaaccaggattttcaggcagtaacggcatcccaggtggacctggttctaaaggagaa
aagggagacccaggtcccccgggactcccaggaagcaccgggccaatagatttaagagga
gctaaaggagatcctggagctccaggattaccaggccctcctggacccaaaggcattgca
ggtctagctggtgaccctggatcgcctggacaagatggacgccctggcagtcctggaggg
ccagggcttaagggagaacctggtgctccagggagtcctggtggtcctggacctcaaggt
caaaaaggcgcaatgggagatatgggaattccaggacctctggggtcaaaaggcgtagca
ggtcctcaaggtaggccaggatccccaggtcaaccaggaccagctggcctccaaggacca
aaaggtgacccaggttctgctggcgttggaccacctggacccccgggacaaaagggagat
cggggtcagcctggatatcaaggaagtcctggagttaaaggaggtccgggagcacctggt
cttcctgggttgccagggctaccaggggataaaggagatataggccccgcaggattccaa
ggtcctgctggtatccccggtccaaagggtcttgatggtggccctggtccccctggtctc
acaggagctccaggtagaccaggagagacaggtcgaatagggccaccaggaccggttggg
gagaagggccagccgggaagagatgggatcccaggaccagccggtttcaaaggagaacca
ggaagtcctggctttgccgttccaggtcctcctgggattcaagggttgccaggtgaaaaa
ggagacccaggccctcctggtcctcctggaggcacaggatattccggccaaaaaggggac
agcggctctccaggtcccccaggtcgtccaggtgtcagtggccctccaggccccccggga
cagtcgttccagggccctaaaggaaatcaaggaccccctggaccacctggaagatcaggc
cccgcaggtcctccaggagcgcctgggccagtgggtccccgcggtctcccaggaagtggc
ggcgttaagggagagaaggggaaccccggaaatccgggtcagcccggccagcctggtgaa
aaaggagaacttggtttttcgggaccaccgggccctgctggtggtcctggtggccctggt
ccaaagggagatataggatttacaggcattgctgggttcccaggaacaaagggagaccga
ggacttcctggtcccattggacctcctggagatcctgggagcgagggaccacctggccct
cctggagaacctgcgtcttcggtacctattgattatgtgaaaggagagcgaggacctccg
gggccacgaggaagcccgggtgctacaggcccacccggtccgactggaccccctggatcc
tcaggtgctccaggtccctctggagaacccggttcacctggtcccccaggcttcaacggc
ccacctggtaggaagggagacactggacccgcagggccacctggccaaaagggcaaccct
ggtccacctgggtcagatggtccacagggtccgccgggccttccgggctcagggtcagga
gcccacggcttcctcctcacccgacacagccagagtgaaataacgccagagtgtcctttc
ggaaccaacttcatctacgacggatactccctgctgtacgtgcaaggcaacgagagggct
cacggacaggacctcggcaccgccggcagctgtctgcgccgcttcagtcccatgccgttc
atgttctgcaacatcaacaacgtctgcaacttcgctgcccgtaacgactattcctactgg
ctgtcgactttgaagcccatgcctatgtccatggaggcagtgactggagagagcatcaag
ccttacatcagcaggtgttctgtgtgtgaagctccagccatggtgattgccgtccacagc
cagaccatccagattccctcttgtcccgcaaactggagatccctgtggatcggattctcc
ttcatgatgcacaccagtgcaggcgccgagggctccggtcaggccctggcctcccccggc
tcctgcctggaggacttccgcagcacgcccttcatcgagtgccacggcagagggtcgtgt
aactacttcagcaactcctacagcttctggctggctactgtggagaaacttgacatgttc
aagaaaccccagtcagagactttaaaggctggtaacctactcacacgtgtcagccgctgt
gtggtctgcatgaaggcaacgtaa
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