Gambusia affinis (western mosquitofish): 122820724
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Entry
122820724 CDS
T07758
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04382
Cornified envelope formation
gaf04510
Focal adhesion
gaf04512
ECM-receptor interaction
gaf04518
Integrin signaling
gaf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122820724 (col4a5)
04518 Integrin signaling
122820724 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122820724 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122820724 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122820724 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gaf04147
]
122820724 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
gaf00536
]
122820724 (col4a5)
Exosome [BR:
gaf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122820724 (col4a5)
Glycosaminoglycan binding proteins [BR:
gaf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122820724 (col4a5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122820724
NCBI-ProteinID:
XP_043954240
LinkDB
All DBs
Position
LG18:complement(8816995..8872150)
Genome browser
AA seq
1687 aa
AA seq
DB search
MTRGLRRLRQPAWVVICLVLYATIQLSDSAACNGCGGSKCDCSGVKGEKGERGFPGLTGQ
PGVPGFPGPEGPIGTRGEKGSDGPLGPSGPKGIRGPPGLPGFPGTPGLPGLPGQDGAPGP
RGVPGCNGTKGEPGFPGSSGIPGRQGFPGPPGLPGEKGDRGDVFSTNNFGPRGAVGLPGL
PGSPGSPGPIGLPGPTGPPGIQGYQGVPGPPGPPGPKGNMGLNFEGPKGDKGDQGLPGPP
GPPGPGQGEQIRPPPTEIQRGDKGDPGPPGPPGDPGNPGPPGPYGGQKGEKGEPGEPGKR
GKSGKDGDPGAPGYTGLRGEPGSPGLTGRDGERGEKGDRGFPGPPGPVIRPTNGVLVGPK
GEPGASGPPGAKGERGPTGFSGPPGSPGVPGIGGSGPPGPPGYPGDKGQKGDPGSPSIVL
PGPPGRQGNPGNPGPQGPPGPPGYSSPIDNCLPGDPGPPGIQGLKGYPGEQGQKGQKGET
CVNCIDGGNPIPGPPGPPGPPGYPGSPGPQGFKGEMGFRGTTGLSGPPGNPGPVGPQGSP
GEKGDPGDTFGISVKGEKGDSGFPGPPGLPGLDGRPGRDGAPGPPGPKGAPGPLLLKGER
GPPGDTGPPGLPGDRGPPGGPGYGSPGPPGEKGDQGSSGQPGIPGQQGQKGEQGPAVGEK
GQPGPIGMDGNPGPPGPPGPRGQDGQPGLTGLPGSKGEPGQPGIGLTGPPGVKGFPGIPG
QPGAPGKVGRPGIDGPPGPPGYAGPKGDAGFGLPGPQGPPGQPGAKGYPGQKGDRGFPGG
PGGPGRPGFDGGPGMKGEPGAQGQRGPPGPPGISTGGVQGPPGPPGPPGPIGPQGYTGGI
GEKGDPGPPGLDIPGSPGDRGSPGYPGPPGPIGVPGPPGGPGRDGPPGFTGQKGDMGPMG
PPGPPGGPGPQGGPGEPGLKGEPGFSGSNGIPGGPGSKGEKGDPGPPGLPGSTGPIDLRG
AKGDPGAPGLPGPPGPKGIAGLAGDPGSPGQDGRPGSPGGPGLKGEPGAPGSPGGPGPQG
QKGAMGDMGIPGPLGSKGVAGPQGRPGSPGQPGPAGLQGPKGDPGSAGVGPPGPPGQKGD
RGQPGYQGSPGVKGGPGAPGLPGLPGLPGDKGDIGPAGFQGPAGIPGPKGLDGGPGPPGL
TGAPGRPGETGRIGPPGPVGEKGQPGRDGIPGPAGFKGEPGSPGFAVPGPPGIQGLPGEK
GDPGPPGPPGGTGYSGQKGDSGSPGPPGRPGVSGPPGPPGQSFQGPKGNQGPPGPPGRSG
PAGPPGAPGPVGPRGLPGSGGVKGEKGNPGNPGQPGQPGEKGELGFSGPPGPAGGPGGPG
PKGDIGFTGIAGFPGTKGDRGLPGPIGPPGDPGSEGPPGPPGEPASSVPIDYVKGERGPP
GPRGSPGATGPPGPTGPPGSSGAPGPSGEPGSPGPPGFNGPPGRKGDTGPAGPPGQKGNP
GPPGSDGPQGPPGLPGSGSGAHGFLLTRHSQSEITPECPFGTNFIYDGYSLLYVQGNERA
HGQDLGTAGSCLRRFSPMPFMFCNINNVCNFAARNDYSYWLSTLKPMPMSMEAVTGESIK
PYISRCSVCEAPAMVIAVHSQTIQIPSCPANWRSLWIGFSFMMHTSAGAEGSGQALASPG
SCLEDFRSTPFIECHGRGSCNYFSNSYSFWLATVEKLDMFKKPQSETLKAGNLLTRVSRC
VVCMKAT
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atgactagaggcttgaggcgcctgcgacagcctgcctgggttgtgatttgcctcgtactg
tacgccaccatacaactatccgactctgcggcttgcaatgggtgtgggggctccaagtgt
gactgcagtggagtgaaaggagaaaagggggagaggggtttcccaggtcttaccggacag
ccaggggtcccagggttccccggacctgagggaccaatcggaactagaggagagaaggga
agtgatggacctttgggaccatctggtccaaaaggaataagaggaccgcccggattgcct
ggatttccaggaacgccaggacttccaggtctgccaggacaggacggagccccaggcccg
aggggagtgccgggttgtaatgggacaaagggtgaacctggttttccaggaagttcagga
atacctggacgacaaggatttccaggtccacctggtctcccaggagaaaagggagaccgt
ggagatgtgttttccaccaacaattttgggccaagaggagcagtcggtttgcccggattg
ccagggtctccgggcagtcctggacccatcggtttaccaggcccgactggccctccagga
atccaaggctaccagggtgttccaggtcctccaggtcctcctggacctaagggaaacatg
ggtttgaactttgaaggccccaaaggagacaagggtgatcaaggcttgccgggacctccc
ggtcccccgggacccggtcagggggaacagatcagaccaccaccaacagagatccagaga
ggggacaagggtgaccctggccctccaggtccaccaggtgacccaggcaacccaggtcca
cctggtccctatggtggccagaagggagagaaaggagaaccaggagaaccaggaaaacga
ggaaaatccggcaaagacggagatccaggagctccaggatacacaggactccgaggagag
cctggaagtccaggtctcacaggccgagatggagagagaggagaaaaaggcgacagagga
tttccgggacctccaggaccggtaattcggcctacgaatggagttcttgttggtccaaaa
ggtgaacccggtgcttctggacctcctggagctaaaggagaaagaggaccaacaggtttc
tcggggcctccgggttcaccaggagttccaggcataggcggcagcggccctccaggtcct
ccaggttaccctggagacaaaggtcagaagggagaccccggcagtccttccattgtcttg
cccggtcccccaggacgtcagggaaatcccgggaatcctggtccacaagggccgcctgga
cctcccggctatagttcaccgatcgataactgccttcctggagatcctgggcctcctgga
atccagggtctaaaaggttatcctggagagcaaggccagaaaggtcagaagggagaaacc
tgtgtgaactgtattgacggaggcaatcctataccggggcccccagggcccccaggaccc
ccaggctacccaggctctcctggcccgcaaggtttcaagggagaaatgggttttagagga
acaacaggccttagtggaccccctggtaatcctggtcctgtaggtcctcaaggttccccc
ggagagaaaggagatcctggagataccttcggaattagtgtgaaaggagagaagggtgac
agtggtttccctggaccacccggtctgcctggcctggacggtcgacccggtcgtgacgga
gcgcctgggcctcctggccccaagggagctcctgggcctctgctcttaaaaggagaacga
ggtcctcctggtgacacaggtccgcccggcctcccaggagacagaggtccaccgggcggt
cctggttatggaagcccaggtccaccaggggagaaaggtgatcagggcagctcaggacag
cctggcattcccggacaacaaggtcaaaaaggcgaacaaggtccggcggtcggagagaag
ggtcagccaggacccatagggatggatggcaacccagggccgcccggtccaccaggtccg
cgaggtcaggatggacagcctggtttaacaggtttgcctggatcaaagggtgaaccagga
caaccgggcatcggccttacaggtcctcctggagtgaagggattcccgggtattccgggc
cagccgggagcacctggaaaagtagggagaccgggaatagatggacccccggggccacca
gggtatgctggaccaaagggtgacgcaggctttggacttcctggtcctcagggtccacct
ggtcaaccaggagctaaaggataccctgggcaaaagggggatcgtggtttccccggcggc
ccaggtggaccagggcgacctgggtttgatggcggaccaggaatgaaaggggagcccggc
gcacaaggccaacgtggacctcctgggccccctggaatctcaacaggtggtgtacaaggt
cctccaggccctcctggacccccagggccaatcggaccacaaggatacacaggaggaatt
ggagagaaaggagacccaggtccaccaggcttagacatccctgggtcaccaggtgacaga
gggagtcctggttatcctggcccccctggaccaataggagtcccaggaccccctggagga
cctggaagggacggcccacctggattcacaggtcagaaaggtgacatgggtccaatggga
cctccaggaccaccggggggacctggccctcaaggaggacctggtgaaccaggtcttaaa
ggtgaaccaggattttcaggcagtaacggcatcccaggtggacctggttctaaaggagaa
aagggagacccaggtcccccgggactcccaggaagcaccgggccaatagatttaagagga
gctaaaggagatcctggagctccaggattaccaggccctcctggacccaaaggcattgca
ggtctagctggtgaccctggatcgcctggacaagatggacgccctggcagtcctggaggg
ccagggcttaagggagaacctggtgctccagggagtcctggtggtcctggacctcaaggt
caaaaaggcgcaatgggagatatgggaattccaggacctctggggtcaaaaggcgtagca
ggtcctcaaggtaggccaggatccccaggtcaaccaggaccagctggcctccaaggacca
aaaggtgacccaggttctgctggcgttggaccacctggacccccgggacaaaagggagat
cggggtcagcctggatatcaaggaagtcctggagttaaaggaggtccgggagcacctggt
cttcctgggttgccagggctaccaggggataaaggagatataggccccgcaggattccaa
ggtcctgctggtatccccggtccaaagggtcttgatggtggccctggtccccctggtctc
acaggagctccaggtagaccaggagagacaggtcgaatagggccaccaggaccggttggg
gagaagggccagccgggaagagatgggatcccaggaccagccggtttcaaaggagaacca
ggaagtcctggctttgccgttccaggtcctcctgggattcaagggttgccaggtgaaaaa
ggagacccaggccctcctggtcctcctggaggcacaggatattccggccaaaaaggggac
agcggctctccaggtcccccaggtcgtccaggtgtcagtggccctccaggccccccggga
cagtcgttccagggccctaaaggaaatcaaggaccccctggaccacctggaagatcaggc
cccgcaggtcctccaggagcgcctgggccagtgggtccccgcggtctcccaggaagtggc
ggcgttaagggagagaaggggaaccccggaaatccgggtcagcccggccagcctggtgaa
aaaggagaacttggtttttcgggaccaccgggccctgctggtggtcctggtggccctggt
ccaaagggagatataggatttacaggcattgctgggttcccaggaacaaagggagaccga
ggacttcctggtcccattggacctcctggagatcctgggagcgagggaccacctggccct
cctggagaacctgcgtcttcggtacctattgattatgtgaaaggagagcgaggacctccg
gggccacgaggaagcccgggtgctacaggcccacccggtccgactggaccccctggatcc
tcaggtgctccaggtccctctggagaacccggttcacctggtcccccaggcttcaacggc
ccacctggtaggaagggagacactggacccgcagggccacctggccaaaagggcaaccct
ggtccacctgggtcagatggtccacagggtccgccgggccttccgggctcagggtcagga
gcccacggcttcctcctcacccgacacagccagagtgaaataacgccagagtgtcctttc
ggaaccaacttcatctacgacggatactccctgctgtacgtgcaaggcaacgagagggct
cacggacaggacctcggcaccgccggcagctgtctgcgccgcttcagtcccatgccgttc
atgttctgcaacatcaacaacgtctgcaacttcgctgcccgtaacgactattcctactgg
ctgtcgactttgaagcccatgcctatgtccatggaggcagtgactggagagagcatcaag
ccttacatcagcaggtgttctgtgtgtgaagctccagccatggtgattgccgtccacagc
cagaccatccagattccctcttgtcccgcaaactggagatccctgtggatcggattctcc
ttcatgatgcacaccagtgcaggcgccgagggctccggtcaggccctggcctcccccggc
tcctgcctggaggacttccgcagcacgcccttcatcgagtgccacggcagagggtcgtgt
aactacttcagcaactcctacagcttctggctggctactgtggagaaacttgacatgttc
aagaaaccccagtcagagactttaaaggctggtaacctactcacacgtgtcagccgctgt
gtggtctgcatgaaggcaacgtaa
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