Gambusia affinis (western mosquitofish): 122821571
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Entry
122821571 CDS
T07758
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122821571 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122821571 (xab2)
03041 Spliceosome [BR:
gaf03041
]
122821571 (xab2)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122821571 (xab2)
Spliceosome [BR:
gaf03041
]
Complex B
Other components
Prp19-related factors
122821571 (xab2)
Complex C
122821571 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
ARM_TT21
ARM_TT21_C
TPR_16
SNAP
TPR_MalT
NRDE-2
Tcf25
TPR_1
Motif
Other DBs
NCBI-GeneID:
122821571
NCBI-ProteinID:
XP_043955553
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Position
LG19:complement(19802928..19892706)
Genome browser
AA seq
849 aa
AA seq
DB search
MPSLNGKADVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITDPAYEEVNNCHERALVFMHKMPRIWTDYCQFVVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVHSLPLPETSLRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAIVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKEEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIVINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDVHAR
DMCMRFADMECKLGEIDRARAIYSFCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKASTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEINIDDDEDEDDDDQEPDEVQLEQKSVPT
AVFGGLKED
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccttccctaaatggaaaagctgacgttatatttgaggatgatgatcttccttatgaa
gaggagattatcaggaatccatactcagtcaagtgctggatgcgctacattgaattcaaa
cagaatggagccaaatccaccctgaacatgatatatgaacgggctctgaaggaattgcct
ggaagctataaattgtggtacaattatctgagagaaaggaggaaacaagtcaaaggaaaa
tgcattacagatccagcatatgaagaggtcaataactgccatgaaagagcacttgtgttt
atgcacaagatgcccaggatatggactgattactgtcagttcgtcgtgtcacagtgtaag
atcacgagaagtcggagaacgtttgaccgggctctaagagcgctacctgtaacccagcac
ccacgaatctggccattgtatctgcgcttcgttcacagcctccccctacctgaaacatct
ctgcgggtatatcgaaggtaccttaagctatctccagagaatgcagaagagtacatagac
tacttgcggtctgttggtcgcttggatgaagcagctgtacgattagcagcaattgtaaac
gatgaaagctttgtgtccaaagagggcaaatccaactatcagctgtggcacgagctgtgt
gacctgatctctcagaatcctgataaagtgacctctttaaatgttggagccatcatacga
ggtggcctcacacgctttacagaccaacttggaaaactttggtgttctttggctgattat
tacatcaggagtggtcactttgagaaagcacgggacgtttatgaggaagccatacttact
gtagtaactgtgagggatttcactcaagtgtttgatagctatgctcagtttgaggagagc
atgattgctgcaaagatggagaccactgctgagatgggaaaagaggaggaagatgacata
gacctggagcttcgtctggcccgctttgagcagctcattgcccggcggccactgcttctc
aacagtgtactgctgaggcagaatccccataatgtgcacgagtggcacaagcgagtaaaa
ctttatgaaggaaatccacgacagatcatcaatacatacactgaggcagtacagacagtg
gatccaatgaaggccactggaaaacctcattctctgtgggtttcttttgctaagttctat
gaggaaaatgaacagctggatgacgccaggacaatctttgagaaggctactaaagtaaac
tacaaacaagtggatgaccttgctgcagtttggtgtgaatatggagagatggaacttcgc
catgagaattatgatcaggcactacgcatactgaggaaagctacagcaatcccatctaag
aaagcagagtactttgattcatctgagccagtccagaacagagtgtacaagtctctgaag
gtctggtctatgctggctgacctcgaggagagtctcgggacttttcaatctacaaaagca
gtgtatgaccggattattgatctacgcattgccactcctcaaattgtcatcaactatgcc
atgttccttgaagaacacaactactttgaggaaagctttaaagcttatgaacgagggatc
gctctcttcaagtggccaaacgtttatgacatctggaacacttaccttaccaagttcatt
gaccgttatggtggcaaaaaattggagcgagccagagatttatttgaacaagccctggat
ggctgccctgccaagtttgccaaaaccatttatctgttgtatgccaaactggaagaggaa
tatggattggcacggcatgccatggctgtctatgaaagagcaacacaagcagtggaaact
gaagagagacaccatatgtttaacatctacatcaagagagcagctgaaatttatggtgtt
acgtacaccagagctatttaccagaaggctattgaggttcttcctgatgtgcatgcgagg
gatatgtgtatgcgatttgctgacatggagtgtaaacttggggagattgaccgtgccaga
gcaatctactccttctgctctcagatctgtgacccaagggtgacagcaaatttctggcag
acctggaaggaatttgagattcgccatggaaatgaggatacaatcagggagatgttgaga
atcaagcgcagtgtccaggctacatacaacacccaggtcaactttatgtcctcacaaatg
ctgaaggcttcaacaagctctacaggcactgtttcagatcttgctcctggccagatggga
attgatgatatgaaaatgttggagcagaaagctcagcaacttgctgcagaagctgagcag
gacaaacccaaacccaaggagaaaattctgtttgtcaggagtgatacttctcgcagtgag
ttggctgagctttccaaacaagccaatcctgatgagataaatattgacgacgacgaggat
gaagatgatgatgaccaagaacccgatgaggtgcagcttgagcagaagagtgttccaaca
gctgtcttcggaggtcttaaagaggactga
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