Gambusia affinis (western mosquitofish): 122821887
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Entry
122821887 CDS
T07758
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122821887 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gaf03041
]
122821887 (ddx42)
Enzymes [BR:
gaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122821887 (ddx42)
Spliceosome [BR:
gaf03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122821887 (ddx42)
Complex B
122821887 (ddx42)
Complex C
U2 SnRNP specific factors
122821887 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
CARF-assoc_HTH
Motif
Other DBs
NCBI-GeneID:
122821887
NCBI-ProteinID:
XP_043956119
LinkDB
All DBs
Position
LG19:20610937..20620895
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AA seq
927 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGKKEEPNVPPKSHTSLGASGSSGSYGKSPQLPSFYKIG
SKRANFDEENAYFEDDEEESSSNADLPYIPAENSPTRQQMKSGGGGGSDSEDDPLDAFMA
EVENQAAKDMRKLEEKEKKSTKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEENIDY
DSDGNPIPSTTKKIILPLPPIDHSEIDYPPFEKNFYIEHEELSILNGSQVLELRQKLNLR
VSGAAPPKPCTSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIMDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKVYSLRSVAVYG
GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVR
SIGSHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQLVELLLSGS
DKWNWLTRRLVEFTSTGSVLIFVTKKANSEELATNLTQEGYSLGLLHGDMDQSERNKVIS
DFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TSKDTSFAGDLVRNLEGANQAVPKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYKE
RPGLGAESSERGSSLSSASSFESYSKPTTGAMGDRMSALKQAFQAQYKSHFVAATSGSPK
LSTKSSSSSGWTSAGSLNSVPTEAANGSERPNLAPFSMPGFTSAGSLSSVPANPTGSQHS
SSPPAPPTHREIPRDRHGESQGRPGDGHHRHSDRSDRHSSEDRYGDRDRHGDRDRDRHGD
RDRHSSRHSDSRNGDGSRRERDDRRGDRDGGDRGSGEGRDRDGGDRGSGEGRDRDGGDRG
SGEGRDRGDDSFAVPDPPKRRKSRWDN
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggcggtccaggagtgaagcgtgggtttggtttcggaggtttttcc
cttgcagggaagaaagaggagcctaatgttcccccaaaatctcacacatcacttggcgct
tctggatcaagtggcagttatgggaaaagcccacagcttccgtctttctacaaaataggg
tccaaaagagctaattttgatgaagaaaacgcgtatttcgaagacgacgaagaagagtcc
agcagcaacgccgatctgccctacattcctgctgagaactcgcccacgcggcagcagatg
aagtcgggcggcggtggcggctcagacagtgaagacgacccgttggacgccttcatggca
gaggttgagaaccaagcagctaaagacatgaggaaactagaagaaaaggagaaaaaatca
accaagggtattcgtgatgacattgaggaagaagatgagcaagaagcgtatttccgctac
atggcagagaatcccacagcagggctgacccaggaggaagaggaggaaaacatcgactat
gacagtgatggaaacccaattccttctacaaccaagaaaataatcctgccgctgccacca
attgatcactcagagatcgactacccaccttttgagaaaaacttttacattgaacacgag
gagctaagcattctcaacggcagccaagtgttggagttgaggcagaaactcaacttgaga
gtttctggtgctgcccctcctaaaccttgcaccagctttgctcacttcggcttcgatgag
cagctgatgcatcagattcgaaagtctgaatacactcagcccacgccgatccagtgtcag
ggagttcccattgcgctttctggacgcgacatgatcggcattgcaaaaacaggaagtggt
aagacagcggcattcatctggccgatgctggttcacatcatggaccagaaggagctggag
ccgggagagggacctatagcggtcatcgtgtgtcccaccagggagctctgtcaacagatc
catgcagagtgcaagcgttttgggaaagtgtactcgctgcgttctgtggctgtttacgga
ggcggcagcatgtgggagcaggccaaggctctgcaggagggagcagagatcgtggtgtgc
acgccgggtcgcctgattgaccatgttaaaaaaaaggccacatccttgcagagagtgaca
tatctagtgtttgatgaagctgatcgcatgtttgatatgggatttgaatatcaggtgaga
tcaattggaagccatgttcgcccagacaggcagactcttctcttcagcgccacttttcgg
aaaaaaatcgagaggttggcgagggacattttagttgatcctattcgggttgtgcaaggc
gacatcggagaggccaacgaggatgtgactcagttggtggagctgctgctcagcggatca
gataaatggaactggctgacccgaaggctggtcgagttcacttccaccggctctgtgctc
attttcgtcaccaagaaggccaactctgaggagttggccactaacttgactcaggagggc
tacagcctcggcctcctgcacggagacatggaccagagcgagaggaacaaagtcatcagc
gacttcaagaagaaaaatttacccgttctggttgccactgatgtcgccgcccgtggtctg
gacatcccgtcaattcgcaccgtggtgaattacgatgtggcgcgcgacatcgacacgcac
actcacagaatcggccgaacgggtcgcgccggggagaaaggtgtcgcttacacccttctg
accagcaaagacacttcgtttgccggcgacttggtgcgaaacctggagggagccaatcag
gccgttcccaaagagctcatggatttagccatgcagaatccctggttcaggaaatcgcgg
tttaagggaggtaaaggaaagaagctgaacatcggtggaggcggtcttggttacaaagag
agaccgggtctgggggccgagagctctgaacgtggcagcagcttgtcttctgctagtagc
tttgaaagctacagcaaaccgacaactggggcgatgggggaccgcatgtctgcactgaaa
caagctttccaggctcagtataagagccattttgtggcggcaaccagcggctctccgaag
ctcagcaccaagtctagcagctcctccggttggaccagcgccggcagcctgaactctgtg
ccaacagaggccgccaacggctcagagcgacccaacctggcacccttttcaatgcctggt
ttcaccagcgccggctccctgagttccgtgcccgccaatccaactggctcacagcacagc
agctctccacccgcacccccgacacacagagagatcccgcgggaccgacacggggagtcc
cagggtcgtcccggcgacggccatcaccgccacagcgacaggagcgaccggcatagcagc
gaggatcgctacggtgaccgggaccgacacggagacagagatcgcgaccgccatggtgat
agagatcgccacagcagccgccacagcgacagccggaatggcgacggaagcagaagagag
agagatgaccgtagaggggacagggatggcggagacaggggaagcggggaggggagggac
agggatggcggagacaggggaagcggggaggggagggacagggatggcggagacagggga
agcggggaggggagggacaggggagacgatagcttcgcagttcccgacccgccgaaacgc
agaaagagccgatgggataactaa
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