Gambusia affinis (western mosquitofish): 122822200
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Entry
122822200 CDS
T07758
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03440
Homologous recombination
gaf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122822200 (top3a)
03460 Fanconi anemia pathway
122822200 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gaf03032
]
122822200 (top3a)
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122822200 (top3a)
Enzymes [BR:
gaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
122822200 (top3a)
DNA replication proteins [BR:
gaf03032
]
Eukaryotic type
DNA Topoisomerases
122822200 (top3a)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
122822200 (top3a)
FA (Fanconi anemia) pathway
122822200 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
122822200
NCBI-ProteinID:
XP_043956617
LinkDB
All DBs
Position
LG19:complement(6630680..6650754)
Genome browser
AA seq
1028 aa
AA seq
DB search
MLIAHLLGRSTLRSGLLRARRGVFWATRSRWCSDAAQGADMIRSRAQIKRVLCVAEKNDA
AKGISEIMSGGRARRREGFSKFNKIYEYEYNLFGQNVTVTMTSVSGHLLGLEFKAPFQKW
HSCSPVLLFDAEVEKNCPDNMVPIKRTLEKEARQCQALVIWTDCDREGENIGFEIIDVCK
AVKPNLQIFRAKFSEITPNSIRRACETLTEPDCNISDAVDVRQELDLRIGASFTRFQTLR
LQKIFPESLANQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVLHEVEEDSVEFSW
KRNRLFHHTACLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVELEKLASRKLRINAK
ETMRIAEKLYTQGLISYPRTETNIFPANLPLAPLVEQQAQSPEWGTFAQRVLDQPGGPNP
RQGKNSDQAHPPIHPTKYTNTLQGNEARVYEFIVRHFLACVSQDALGQETVVEIEIAQEK
FSTSGLMIIARNYLDVYPYERWSTKLIPVYEQGSQFQPSAIEMVDGQTSPPQLLTEADLI
SLMEKHGIGTDATHAEHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKPNL
RAELEADLKLVSEGRKDKRSVLQHHIQKYKAVFIESVRKAKKLDEALSSYLGTALELPDA
EQLDVEVPLPVRKCPNCGRDMVLKKKREGNSKFLTCVGFPACKTAVWFSDAVLEVSRDDG
VCPTCQPSPIHLLKFKFRRGSVPPMMPLEFVGCIGGCDETLREVLDLKYLGGGGGRSRGP
GDATGWSGGGGDDAPPPRPPRPPPPRPSMPPVPAWTAQPRPPPGGSDMEASSDVIVCNCG
QDALLLTVRKDGPNQGRQFYKCNSGACNFFLWADQPSQQGAPPPQSRGPPLSAQRSPQAP
RASVGFGNMSAGGRGHGAGAAGQTMCNCNDNAVTRTVQKDGPNKGRMFHTCGKPRDQQCG
FFQWADENVPPPGGFGGGFNAFNGDGGKKGRRTAGDADAAGRPPAARKPRTCGICHMPGH
TRVTCPQR
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgctgatagcgcacctcctcggcagatccacgcttcgatcgggactactgcgggctaga
aggggggttttctgggcgacacggagccgctggtgctcggacgcagcgcagggggcagac
atgattcgcagccgagctcagattaagcgggtcctctgcgtggccgagaagaacgatgca
gccaaaggcatctctgagatcatgtctggcggcagagccaggaggagagaaggattttcg
aagttcaataaaatatatgagtatgaatataatctttttggccagaatgtgacggtgaca
atgacctcagtgtcaggccatttgctgggactggagttcaaagcgcctttccagaaatgg
cacagctgcagtcccgtgttgctgtttgatgcagaggtagagaagaattgcccggacaac
atggttccaatcaagcggactctggagaaggaagcgaggcagtgccaggctctggtcatc
tggactgactgtgaccgggagggagaaaacattggcttcgaaatcatcgacgtttgcaaa
gcagtgaaacccaatttgcaaatctttcgagcgaagttttcggagatcactcccaactcg
attcggagagcgtgtgagacgctgacggagcccgactgcaacatcagcgacgccgtcgat
gtccggcaggagctggatctgcggataggtgcgtcctttacccggttccagacgcttcgc
ctgcagaagatcttccccgagtctctggccaatcagctgatctcatacggcagctgtcag
tttcccactctgggatttgtggtggagcgcttcaaagccattcaggcttttatacccgag
actttctacaagatcaaagtgctccatgaggtggaagaggacagtgttgagttcagctgg
aagagaaaccgcctcttccatcacacagcttgtctggtgctctaccagatctgcatggag
gatcccatagcaacagtcacctcagtaacaagcaaacccaagagcaaatggagaccgctg
cctttggacacagtggaactggagaaactggcgtctaggaagctcagaataaatgccaaa
gagacgatgaggattgctgaaaagctttatactcaagggttaatcagctatcctcgcaca
gaaaccaacatatttcctgcaaaccttcccctggcgcccctggtggagcagcaggcgcag
agcccggagtgggggacgtttgcccagcgggttctggaccagcctgggggccccaaccca
cggcagggcaaaaactctgaccaggcccaccctcccatacaccccaccaagtacaccaac
acgctgcagggcaacgaagcacgtgtgtatgagttcatcgtgcgccacttcctggcctgc
gtttcccaggatgctttggggcaggagacggtcgtggagatagaaattgctcaggagaag
ttctccacatctggactcatgattattgcaaggaattacctggacgtctacccgtacgag
aggtggagcacaaagctgataccagtttatgagcagggctcccagttccagccctccgct
attgagatggtggacggacagacgagcccgcctcagctgctgaccgaagccgacctcata
tccctgatggagaagcacggcatcggaacggatgcgacccacgcagaacacatcgagacc
attaagagtcgcatgtacgtcggtctgactgcggaccagaggtttctccccggggagctc
ggcatgggactagtggagggttacaactccatgggctacgagatgtcgaagcccaacctg
cgcgccgagctggaggccgacctcaagctggtgtcggagggcaggaaggacaagcggagc
gttctgcagcaccacatccagaaatacaaagctgtcttcatcgagtccgtgaggaaagcg
aagaagttagacgaggctctgtcgtcgtacctgggcacagctctggagctgcctgacgcg
gagcagctggacgtggaggtcccgctgccggtcaggaagtgtcctaactgtgggcgggac
atggtgctgaagaagaagagggagggaaacagtaagtttctgacctgtgtgggcttcccg
gcctgtaagacggccgtctggttctcggacgcagtgctggaggtcagcagggacgacggt
gtttgtcccacatgtcaaccgagccccattcacctgctgaagtttaagttccgcagaggc
agcgttcctcccatgatgcctctggaatttgttggctgcatcggtggctgcgacgagacg
ctcagagaggttttggacctcaagtacctcggaggaggaggaggaagaagcagaggaccg
ggggatgctacaggatggagtggaggaggaggagatgatgctccgcctccgaggcccccg
agaccgccaccgcccagaccctccatgcctcctgttcccgcctggaccgcccagcccaga
cctccaccaggtggcagcgacatggaagccagcagcgacgtgatcgtctgcaactgcggc
caggacgcgctcctcctgacggtgcgcaaagacggccccaaccaaggccgccagttctac
aagtgcaactccggggcctgcaacttcttcctgtgggcggatcagccgagtcagcagggg
gcgccgccgccgcagagcagagggcccccgctgtcggcgcagaggtctcctcaggctccc
agggcctcggtagggttcgggaacatgtccgcaggtggcagagggcacggtgcgggcgcc
gcggggcagaccatgtgcaactgcaacgacaacgccgtgacccgcacggtgcagaaggac
ggccccaacaagggccgcatgttccacacctgcgggaagccgagagaccagcagtgcggc
ttcttccaatgggccgacgagaacgtacctccaccaggcggattcggtggaggatttaac
gcgtttaacggggacggagggaagaaggggaggaggacggcgggagacgccgacgccgcc
ggcagacctcccgctgcgaggaaaccgcggacctgcggcatctgccacatgccgggacac
acccgcgtcacctgccctcagcggtga
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