Gambusia affinis (western mosquitofish): 122822286
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Entry
122822286 CDS
T07758
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
gaf01001
]
122822286 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
gaf04054
]
122822286 (ciita)
Enzymes [BR:
gaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
122822286 (ciita)
Protein kinases [BR:
gaf01001
]
Serine/threonine kinases: Other
TAF1 family
122822286 (ciita)
Pattern recognition receptors [BR:
gaf04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
122822286 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
nSTAND3
nSTAND_NTPase5
AAA_16
AAA_30
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
122822286
NCBI-ProteinID:
XP_043956767
LinkDB
All DBs
Position
LG19:complement(8130842..8153766)
Genome browser
AA seq
1682 aa
AA seq
DB search
MKSIVLIRWHLINWSWMPLAAGFHIMAEFAEVLNQVRLVLTVALPGEVHALLEGLVEEGI
ISEAYRNSLNLHWLNDGIVPKFTSKPGCVELDEDLNSPGSVAQLDLNQKPMSQVRTGGSK
SLASDHNVEQTEPISLIKEPNNTRLNLGKNKWLQHENLQRNQEEMQELLEEVLMDLSCLN
QDPLSLLSVYDCTLRSSDEKAELLSGASSEHSCDNESINKGNEESEEVWLQQVEESARRI
AVPLWQNWDRGRGMLQTLLPCVPNGCSISDRMMPEGEAQSAILDMKEEMELAAACSSLDA
CVGDFECEELSFACDTDAGRSEREALHFSTLDGVAVFNTDDSRVLAATRDASPVEACKAT
EARYNTQMLEGQFDVLCPVGKMADKVDDLFCFTADAPYQQCGTGSGLSENTFRDLLHSDV
PEDSRTVLQDTSLYSLTEGLKDYLEDAEVYIVGQDRELQEKTDLHCDAKMQEYDQDSSGL
LDLVSGYISDLLRDDDYLASQLDPNVLFSHDLGPDCFDDIIQKSDTAVALEASDTANHSE
QREQQKPTDKIKPKRKRQRDALSTQCTNGISRDSRVKRRKATEPPKTQEETAEPPAIHDT
EAVTVPAKSVGCLPTTPPGNLLVFPPQSANSIPIQFITIPDPSAYKVVQLSSSPPPLIRL
PLPNTAAAPTYIFVPNPSPTRKRQVPPLSPADGAVAPFLMSSFQPGSMSDTASKVTSPTA
APPSPTNEVSPCKESPKSPVVVEIPQAVRDYIQQSKIHMSQACQCMEAGLRLNSHYVNVS
VSQREIARSGKNTNRCLDKELIITGDIDRQKSSLGQSQIFDSLNGKRYNVLLGNAGMGKT
TVIKKLCLDWSRDCIPQFDFVFLLDGKQLALTEPVHSLQSLLLSQSSFAPHCADPEGVYA
QILAAPKRVLIVFDGFDELRHYETLLQTQKKELVASLQKDSKAQAFTVKQLFSSILQRVL
LPGCTLLLATRPRGTASQLLRRADSFLEVCGFTPANVETYVSQYFSDPELRESALDFLKS
SRYLNLLCWNPGLCHLVCTALEQCKSEDALPRTLTALCHKVLCLKMEKDRGSTELLLEGE
KINTVGPVENTSISNNSPGTRVRKNNRTRPRVVACTASGKQRARKTKGQKKLDEENVCQD
TNRTELLSQLCSLAWEGVKSNTSAVPKGRTVSTKLRAFSLRTGLLLSQSLMKRTPSKREE
TEGGGEVDNGIEEVEDEENKEKGGNPQTSDECEDRILSWANPFLQSYMAAVHLSLSRTVT
DHSFLQTLPFQTAAKGRRKPQREEMELTQRIAAGLLFHNRTELQSLHSYSETVFRDMVAS
KQAMVMKHLEGLCFGDLNSAQILEVCNYVYEASFTYQESGKDTSAKMLTHLASNLPELLT
FRGVPLNPPDVFAVQNALRMGGAEGRSFCLDLEDSGIQICGLRSLVALGNINTYRACIAD
VVTLWEELEKRSDEGLLQDAVSKFKIHPLKATQVCHMEHLERLVGIHTSKRLSDSPCQSN
SLLAEGVPAVKELYKLEFELGPENSSLALPKLWDLLPGLHNLQHLEVENSKIGDKGAEKL
ASALVSLRSLEVLNLSENCIGDQGVKKLALTLKDLPRLHCLSLYSNVISDEGAESLAAVL
PHMASLTDLDIKYNKMTDIGAQSLGASLRKCSKVKTLRMWNQCIPYGVFERLKQQDSRIL
WQ
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctatcgtcttgatcagatggcatctcattaactggagctggatgcctctggca
gctggtttccacatcatggctgagttcgccgaggtcctgaaccaggtcaggttggttctt
actgtagctctgcccggcgaggttcacgctctgctggagggtctggtggaagaggggatc
atctcggaggcatacaggaacagtctgaatctgcactggctgaatgatggcattgtgcct
aaattcacgagtaaaccaggatgtgtcgagctggatgaggacttaaattctccaggatcc
gtggctcagttggacctcaaccaaaaaccgatgagccaagtgaggacaggcggatcgaaa
tctcttgctagtgaccacaatgtggaacaaacggaaccgatctcattaataaaggaacca
aacaacacaagacttaacctgggaaagaacaagtggctccaacatgaaaatcttcagaga
aatcaggaggaaatgcaggaattattggaagaagttctaatggacttgtcctgtttgaat
caagaccctctttctttactgtcggtgtatgactgcactctcagatccagtgatgaaaaa
gcagaactgctgagcggtgcaagcagcgagcattcttgtgataatgaaagcataaataag
gggaatgaggaaagtgaggaggtgtggttacagcaggtagaggaatcagctaggaggata
gctgttcctctatggcagaactgggaccgagggcgagggatgttgcagaccttgctgccc
tgtgtgccaaacggctgttcaataagcgacaggatgatgccagagggtgaagcccagagt
gccattttggacatgaaggaggaaatggagcttgcagccgcttgcagctcgcttgacgcc
tgcgttggcgactttgagtgcgaagagctaagctttgcctgtgacacagatgcaggcagg
tcagaacgagaagcgcttcacttctctaccctcgacggagttgctgtgttcaacacggac
gattccagggtccttgcagcaacaagagatgcctcacctgttgaagcctgcaaagcaact
gaggcgagatacaacacccaaatgctggagggtcaattcgatgttctgtgtccagtcggc
aagatggcagacaaagtggatgacctgttctgttttacggcagacgcaccatatcaacaa
tgtggaacagggtcaggactgtcggaaaacactttcagggacctgctccattcagatgtg
cctgaagacagcagaactgttctacaagatacctctctttatagtctcacagaaggatta
aaagattatctagaagatgcagaagtgtatattgtaggccaagatagagaattacaagaa
aagacggatttacattgtgatgccaagatgcaagaatacgaccaggactcctcgggcctg
ttggatttggtttcaggttatatatcggaccttttgagggatgatgactatttagcttct
cagctggatccaaatgtgctcttcagtcatgacctggggcctgactgctttgatgacatc
atccaaaagagtgacactgccgtggcactggaggcctctgatactgctaaccacagcgag
cagagagagcagcagaagccaacggacaaaataaaacctaagagaaaaagacagagagat
gccctgtctacacagtgcaccaatggaatctccagagactccagagtgaaaaggcgaaaa
gcgacagaaccaccaaaaacccaagaagaaactgctgagccacctgccattcatgatact
gaagcagtgacagttccagcaaagtctgtgggatgtcttcccaccactcctccaggcaac
ctcctcgtgttcccacctcagtcagctaattccattcccattcagttcatcacaatccca
gacccctctgcttataaggtggtccagctgtcctcctcccctccaccgcttattaggctc
ccactcccgaacacagctgctgcgccgacgtacatcttcgttcctaatccctctccgacc
cgcaaacgccaggttccaccgctctctccagcggacggtgcagtggcgccctttctgatg
agctcatttcaaccaggttccatgtcggatacagccagcaaagtcacgtcccccactgca
gctcctccgtcccccacaaacgaggtatccccatgtaaggagtcgccaaagtcccctgtg
gttgtggaaataccccaggctgtgagggattacatccagcagtcaaaaatacacatgagt
caggcttgccagtgtatggaggcaggcctgaggctgaactcccattatgtgaacgtgagt
gtgagccagagagagatcgctcgctctggaaaaaacacgaatagatgtctggacaaggag
ctcatcataactggagatatagaccgccaaaagagctccctggggcagagtcagatcttt
gacagcctgaacgggaaacgctacaacgtgctgttgggcaacgctggcatggggaaaaca
actgtgatcaagaagctgtgtctcgactggtccagagactgcatccctcagtttgacttt
gtctttctattagacggcaaacagctcgctttaacagagcctgtccacagcctccagtcg
ctgctgctcagtcagtcctccttcgctccacactgcgcggatcctgaaggagtttatgct
cagatcctcgcagctcctaaaagggtgcttattgtttttgatggatttgatgagctgcgg
cactacgaaactctgctccagactcagaagaaggagttggtagcctcactgcaaaaagac
agcaaagcccaggccttcacagtgaagcagctgttctccagcattcttcagagggtcctg
cttccaggctgcacgctcctcctcgccacccgcccaagaggcacggcgagccagttgctc
cgccgcgcggacagctttctggaagtctgcggcttcactcctgccaacgtggagacgtac
gtttcccaatacttctccgatcctgaacttagggaatctgctttggacttcttaaaaagc
agcaggtacctcaatctcctctgctggaacccgggtctctgccacttggtgtgcacagct
ttagaacagtgcaaaagtgaggatgccttaccaagaactttaactgcactctgtcataag
gtgctctgcttgaaaatggaaaaagacagaggaagcacagagttacttctcgagggcgag
aaaataaacacggttggacccgtggaaaatacaagcatttctaacaattctccagggacg
agagtacggaaaaataatcgtacaaggcccagagtggtagcgtgcactgcttctggtaaa
caaagagcaaggaagacgaagggacagaagaaactggatgaggagaatgtttgccaggac
accaacagaacagagttgctgtcccagctttgctctttagcctgggagggggtgaaatcc
aacacatcggctgttcccaaaggacgaactgtctccaccaaactcagagccttcagcttg
aggacgggcctgctactttctcagtccctcatgaaaaggacaccttccaaaagagaggag
acggagggaggaggagaagttgacaatgggatagaagaagtggaggacgaagagaacaaa
gaaaagggaggaaacccacaaacgtctgatgaatgtgaagataggatcctgtcgtgggca
aatcctttccttcagagttacatggctgctgtccatttgtctttgtcaaggactgtgaca
gaccactcctttctccagaccctgcctttccagacggctgcaaaaggccgacggaaacct
cagagggaggagatggagctgacgcagcggatcgctgcaggcctcctgttccacaacagg
acagagctacagagtcttcattcatactcggaaacagtcttcagagacatggttgccagt
aagcaggctatggtgatgaaacacctagaaggtctgtgctttggggatttgaactcagct
cagatcctggaggtgtgcaactacgtctacgaagcaagtttcacataccaagagagtggg
aaggacaccagtgccaaaatgctgacccatttggcatcaaatctccctgaactcctaaca
tttcggggcgttcccctcaacccgccggatgtgttcgctgtacaaaacgctctcaggatg
ggtggcgctgagggcaggagtttctgtttggatctggaagactctgggatacagatctgt
ggacttagatcgttagtggccctcggcaacatcaatacatacagggcctgcatagcagac
gtcgtcaccctgtgggaggagctggagaagaggagtgacgaaggcctcctgcaggatgcg
gtgtccaagttcaagatccatcctctgaaagccactcaggtctgtcacatggagcacctg
gaaaggctcgtcggcatacacaccagcaagaggctctcggacagcccctgccaatcaaat
tccctcctggcagaaggggtgccagcagtcaaagagctgtacaagctggagtttgagctt
ggcccagaaaacagttccttggctcttcccaaactgtgggaccttctccctgggctccat
aacctgcagcacttggaggtggaaaacagtaagatcggagacaaaggagcagagaaactg
gcaagtgcattagtctctcttcgctcactggaagtactaaatttgtccgagaactgcata
ggtgaccagggtgtgaagaagctagctctcaccttgaaggacctgcccagactgcactgt
ttaagtctgtacagtaatgtgatttccgacgaaggggcagagagtttagcagctgtcctc
ccacacatggcatcgcttacagacctcgacattaaatataacaagatgacggatattgga
gcacaaagcttgggagccagtttgagaaagtgctctaaagttaagactttgaggatgtgg
aaccagtgtatcccatatggagtttttgagagacttaagcagcaggacagccgcatcctc
tggcaataa
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