Gambusia affinis (western mosquitofish): 122822358
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Entry
122822358 CDS
T07758
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03030
DNA replication
gaf03410
Base excision repair
gaf03420
Nucleotide excision repair
gaf03430
Mismatch repair
gaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122822358 (pold1)
03410 Base excision repair
122822358 (pold1)
03420 Nucleotide excision repair
122822358 (pold1)
03430 Mismatch repair
122822358 (pold1)
03440 Homologous recombination
122822358 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gaf03032
]
122822358 (pold1)
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122822358 (pold1)
Enzymes [BR:
gaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
122822358 (pold1)
DNA replication proteins [BR:
gaf03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
122822358 (pold1)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
122822358 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
122822358 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
122822358
NCBI-ProteinID:
XP_043956907
LinkDB
All DBs
Position
LG19:9622518..9634849
Genome browser
AA seq
1105 aa
AA seq
DB search
MDFKRRNGGPLMGGASQAKRGKATGDWEDSPSQFEEELSMFDDAEMDVEDLEGQAGHDVI
PVGDLFSADLNPRWRRPPAPSLDPSSDTLVFQQIDLDYYLGGSIAGMPGQTQGKVPIIRM
FGVTDNGNSVCCHVHGFAPYFYVPAPSGFTSNYLSEFKAELNSVVLKDMRSNKDNISITV
LAVDICRKESIYGYHGQRSLDFLRITMAMPRLIAPAKRLLEQGFKFGPFPIQSYQAYEAN
IDFEIRFMVDSDVVGCCWIELPTGKYRVREEKSSTDTDSQTPGKVSFCQYEVDVGWTDFI
SHPAEGEWQKIAPLRVLSFDIECAGRKGIFPEPDKDQVIQIASMVQRQGETEPFIRTVFT
LHSCASIVGSQILCFTQEKQLLRSWAEFLRTVDPDIITGYNIQNFDFPYLLNRAAALKVD
YFPYLGRMRGIKSVLRESNFQSKQMGRRENKTINMEGRVQFDLLQVLLRDYKLRSYTLNA
VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVVKTEGGEDYTGATVIEPEKGYYSV
PIATLDFSSLYPSIMMAHNLCYTTLLQKGSAEKLGLSPDDFIKTPTGDQFVKSSMRKGLL
PEILENLLSARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI
SQSVTGFGRQMIEKTKQLVESKYTISNGYQADARVVYGDTDSVMVKLGVTTVKEAMEIGR
EAAEWVSSHFIPPIKLEFEKVYYPYLLINKKRYAGLYFSSSPDTHDKMDCKGIETVRRDN
CPLVANLINTCLQKILIERDPQGAVDHAKEVISDLLCNRIDISQLVITKELTRTAQEYAG
KQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGAAAYMKSEDPIFVLENNIPIDTQY
YLEQQLSKPLLRIFEPILGETKAESVLLKGDHTRCKTVLTSKVGGLMAFAQKRSTCIGCK
AVLKTDAAVCDFCKKKESELYQKEIFHLNALEEHFSRLWTQCQRCQGSLHEDVLCTSRDC
PIFYMRKKVQKDLDDQSKLVSRFGW
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggacttcaagcgacgcaacggtggccctctcatgggtggtgcatcccaggccaagcga
ggtaaagcgactggtgactgggaggacagtccatcccagtttgaggaagaattgtcaatg
tttgatgatgcagagatggatgtggaagacctggaagggcaggccggacatgatgtcatt
cccgtgggtgaccttttctcagcagacctaaaccctcgttggagaaggcctcctgccccc
tcactggatccatcttcagatacattggtgttccagcagattgatctcgactattacctg
ggtggctctatagctgggatgcctggtcagacacaaggaaaagttcctatcattaggatg
tttggtgtaacagataatgggaacagtgtgtgctgtcatgtccatggctttgcgccttac
ttctacgttcctgcaccaagtgggttcacatctaattacctgagtgaatttaaagcagag
ctgaactctgttgttctgaaggacatgcgctccaataaggacaacatctcgatcacagtg
cttgctgtggacatctgccgtaaagagagcatatatggttaccacggacaacgcagcctt
gatttcttgcggataacgatggcgatgcctcgtctcatcgcgcctgcaaagcggctgctg
gaacagggctttaagtttggaccttttcccatccagagctaccaggcttatgaggccaac
atagattttgaaatcaggttcatggtggacagtgatgtagtgggatgctgctggattgaa
cttcccacaggcaagtacagagtgcgtgaagagaagagctcaacagacacagattctcag
actccaggaaaggtttctttctgtcagtatgaagttgatgtcggatggacagacttcata
agtcaccctgcagaaggagagtggcagaagatcgctccacttagggtgcttagctttgac
atagagtgtgcaggaagaaaaggaatctttccagaaccagataaagatcaagtgattcag
atagcctctatggtccaaaggcagggtgaaactgagccgtttattcgcacagttttcacc
ctccactcctgcgctagcatcgttggctctcagatattatgcttcactcaggagaaacag
cttcttcggagctgggcggagttcttgaggactgtagacccagacatcataactggatat
aatatccagaactttgactttccctacctgctcaacagagcggctgctctgaaggtggat
tattttccatatttgggtcgaatgcgagggattaaatcagttctgcgagagtccaacttc
cagagtaagcagatggggcgcagggagaacaagaccatcaacatggagggtcgagttcag
tttgatttgctgcaggttcttctaagggattacaaattacgctcctacactctgaacgct
gtgagcttccattttctacaagaacagaaggaggatgtgcaacattcaatcatcaccgat
ctgcagaatggaaacgaacaaacacggcgccgtttggcggtctactgcctgaaggatgcc
tacctcccgctgcgcctgctgcagaaactgatgtgtgtgattaactacatggagatggcc
agagtgacgggagtgcctctcacttacctcctctccagaggacagcagatcaaagtcgtc
tctcagctgctgcggcaggctatgaaacaggatttggtcatgcctgttgtgaaaactgag
gggggagaagactacacgggagcaacggtcattgagccagagaaaggctattacagcgtt
cctattgccaccctggacttttcctccttgtatccgtccatcatgatggctcacaatctg
tgctacaccaccttgctgcagaaaggctctgctgagaaactgggattgtcaccagatgac
ttcattaagactcccacaggggatcagtttgtgaagagctctatgagaaaaggtctcctt
ccagagatcctggagaacctgctgtctgcccgaaagagggccaaagcggagctaaagaag
gaaaccgaccccttcaagaagcaggtgctagatggccgacagctagccctgaaaatcagt
gccaactctgtgtacggcttcaccggggcccaggtgggcaaactgccctgcttggagatc
tcacagagtgtcactggttttggaagacagatgattgagaaaaccaaacaactggtggag
tccaaatatacaatctccaacggataccaagctgacgccagggtggtttatggagacaca
gactctgtcatggtcaaactcggagttacaaccgtaaaagaagccatggaaattgggagg
gaagcagctgagtgggtgtcgtcgcatttcattccacccatcaagctggagtttgagaag
gtgtattacccatatttactgatcaataagaagcgctatgcaggcctgtatttctcctcc
agtccagacacgcatgacaagatggactgcaaaggcattgagacagtccgcagagacaac
tgccctctagtggccaaccttattaacacatgtctacaaaagatcctcattgagagggat
cctcaaggtgcggtggatcatgcgaaagaagtgatctcagacctgctgtgcaatcgcatt
gacatcagccagctggtcatcacgaaagagctgacgcgtacagcccaggagtacgctggc
aagcaggcacacgtggagctggccgaaaggatgaggaaaagggatgcaggtagcgcccca
aacctgggagacagagtcccgtacgtcatcatcaaggctgcaaagggagcagccgcttac
atgaagtcagaggatccaatctttgttctggagaacaatattcccatcgacacacagtac
tacctggagcagcagctgtccaagccgctgctgaggatattcgagcccatcctgggggag
accaaggcggagagcgtcctgctaaagggcgaccacacgcgctgcaagactgtgttgacc
tcgaaggtcggaggcctcatggcgttcgctcagaagagaagcacctgcatcggctgcaaa
gctgtgctcaagactgatgctgctgtgtgcgatttctgcaaaaagaaagagtctgaactt
tatcaaaaagagatcttccacctgaatgcgttggaggagcatttctcccgtctgtggact
cagtgccagcgctgccagggttcgctccatgaagacgtgctctgcaccagtcgcgattgt
ccgatcttctacatgaggaagaaggttcagaaagatctggatgaccagagcaagcttgtg
tctcgattcgggtggtga
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