Gambusia affinis (western mosquitofish): 122823113 Help Entry 122823113         CDS       T07758                                  Symbol col1a1b Name (RefSeq) collagen, type I, alpha 1b   KO K06236   collagen type I alpha Organism gaf  Gambusia affinis (western mosquitofish) Pathway gaf04510   Focal adhesion gaf04512   ECM-receptor interaction gaf04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:gaf00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     122823113 (col1a1b)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     122823113 (col1a1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     122823113 (col1a1b)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:gaf00536]     122823113 (col1a1b) Glycosaminoglycan binding proteins [BR:gaf00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    122823113 (col1a1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC TILa Motif Other DBs NCBI-GeneID:  122823113 NCBI-ProteinID:  XP_043958322 LinkDB All DBs Position LG20:11716277..11735201 Genome browser AA seq 1446 aa AA seqDB search MFSFVDIRLALLLSATVLLARGQGEDDKQFGSCTSEGQSYNDKDVWKPEPCQICVCDMGT ILCDEVICEDTSDCEDPYIPDGECCPVCSDEGPPTEPTIPKGPTGPRGDPGLPGLPGNDG IPGTPGFPGPPGPPGPPGLGGNFSPQMSYFDPSKSSGPPVPGPVGPPGPRGAPGLPGPPG PSGSPGPQGEPGEPGAVGPMGPRGPAGPPGKNGDDGEAGKAGRPGERGPAGPQGARGFPG TPGLPGIKGHRGFPGLDGAKGDSGPAGPKGEPGVPGENGIPGAMGARGLPGERGRPGPAG PAGARGNDGNTGPAGPPGPTGSAGPPGFPGAVGAKGETGPAGGRGSEGPQGARGEPGNPG PTGPAGPAGTPGSDGQPGAKGANGAPGIAGAPGFPGNRGPAGAQGGAGAPGPKGNNGEPG PPGPKGEAGAKGEPGPAGLQGLPGPSGEEGKRGPRGEPGGAGPRGPPGERGAPGARGFPG SDGAAGGKGAPGERGAPGPMGSQGATGEGGSPGAPGAPGSKGVTGSPGSPGPDGKVGPAG APGQDGRPGPPGPSGSRGQPGVMGFPGPKGAAGESGKPGERGPGGAAGPVGAPGKDGDVG APGPSGPAGPAGEKGEQGPAGAPGFQGLPGPQGATGESGKSGEQGVPGEAGPPGPAGPRG DRGFPGERGGPGPAGPTGARGSPGASGNDGPKGEPGPGGAPGSAGLPGMQGMPGERGSAG IPGPKGERGDAGTKGTDGAAGKDGVRGMTGAIGLPGPPGAQGEKGESGPSGVVGPSGPRG APGERGETGPAGPAGFAGPPGADGQPGAKGETGDTGPKGDAGPSGPPGPVGSAGPQGPAG ATGPKGARGGAGSPGATGFPGPAGRVGPPGPSGAAGPPGPPGSVGKDGPRGSRGETGPAG RPGESGAAGAPGPSGEKGSPGSDGSPGAPGLPGPQGLTGGRGIVGLTGQRGERGSPGIPG PAGEPGKQGPSGLVGERGPPGPAGPPGLSGAPGEAGREGSPGHDGAPGRDGPPGPKGDRG ESGMAGPPGPPGAPGAPGGVGPSGKSGERGESGPAGPVGPAGIGGPRGSAGPAGAKGDRG EAGEAGDRGHKGHRGLSGQPGLPGPPGVHGDRGPAGASGPAGPRGPSGNNGSPGKDGQNG MPGPIGPPGPRGRNGELGPSGPPGPPGPPGPPGAPGSAFEFVAPPQQEKGPDPLRGGYRA DDPNMMRDRDMEVDTTLKTLTQKVENIRSPDGSQKSPARMCRDLRMCHPEWKSGTYWVDP NQGSSLDAIQVHCNMETGETCVYPIDSNIPMKNWYLSKNLREKKHIWFSESMTGGFQFQY GTEGADPEDVNIQISFMRLMSNQASQNVTYHCKNSIAYMDTATGNLKKALLLQGSNDVEI RAEGNSRFTYSVSEDGCSSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGVEV GPVCFL NT seq 4341 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggatattcggttagcgcttttgctcagcgcaacagtgcttttggcg agaggtcaaggcgaggatgataagcaatttggcagctgcacatcagaaggacagtcgtac aacgataaggatgtatggaaaccagaaccctgccagatctgcgtgtgcgacatggggacc atcctgtgtgacgaggtgatctgcgaggacacatccgattgtgaagacccctacattcca gacggagagtgctgccctgtctgctccgatgagggtcctcccactgaacctacgattcca aagggacccactggccccagaggagatccgggtcttcctggtctccctggcaatgatgga atccccggaacgcctggctttcccggcccacccggcccccctgggccccctggccttggt ggaaacttctctcctcaaatgagctactttgacccctccaagtccagcggcccacccgtc cctggcccagttggtcctcctggtccccgtggtgctcctggtcttcccggcccacctggt ccttcaggtagcccaggaccccaaggagagcctggtgagcctggtgctgtgggtccaatg ggtccccgcggtcctgctggccctcccggaaagaacggagatgatggtgaggctggtaaa gctggacgccccggtgagcgtggacctgctggccctcagggtgctcgtggattccccgga acccctggactgcctggcatcaagggacacagaggtttccccggtcttgatggagccaag ggagacagtggacctgctggtcctaagggagagcctggtgtccccggagagaatggcatc ccaggcgccatgggtgcccgtggtcttcctggtgagagaggccgtcccggacctgctggc cctgctggtgctcgtggtaacgatggcaacaccggtcccgctggtcctcccggacccact ggatctgccggaccccctggattccccggcgctgtcggtgctaagggtgagaccggtcct gccggaggtcgtggatctgagggaccccagggagcccgtggtgagcctggtaacccagga cctactggacccgctggacctgctggtactcctggatctgatggtcagcctggtgctaaa ggtgctaatggcgctcccggtatcgctggtgctcctggtttccctggtaaccgtggtcct gctggagctcagggaggcgctggtgctcccggtcccaagggtaacaatggcgagcctggt cctccaggtcctaagggagaggctggtgccaagggtgagcctggcccagctggacttcag ggacttcctggcccctctggtgaggagggaaagcgaggacctcgtggagagcctggtggt gctggaccccgtgggccccctggagagcgtggtgcccccggtgctcgcggtttccctggt tctgatggagctgctggtggaaagggcgccccaggtgagcgcggtgcccccggaccaatg ggatctcagggagccaccggtgagggtggaagccccggcgctcctggcgctccaggatca aagggtgtgaccggtagccccggaagccccggccctgacggcaaagtcggacctgctggt gctcctggtcaagatggccgccccggacctcctggcccctctggatccagaggacagccc ggagtcatgggattccccggacccaagggagccgctggcgaatctggtaaacctggcgag agaggacctggtggagctgccggcccagttggtgctcccggcaaagatggtgatgttgga gctcctggaccttctggacctgctggacctgctggagagaaaggagagcagggacctgct ggtgcaccaggattccaaggtcttcctggaccccaaggtgctactggtgagagtggcaag tctggtgagcagggcgttcctggagaggccggaccacccggcccagctggacccagaggt gacagaggcttccctggtgagcgtggcggtcccgggcctgccggtccaactggagcccgt ggctcccctggtgctagtggaaacgatggacctaagggagagcctggacctggtggcgcc cccggtagtgcgggactccctggtatgcagggaatgcctggagagcgaggatctgccggt attcctggacccaagggagagagaggagatgctggtactaagggtactgacggtgccgct ggcaaagacggcgtgcgcggtatgactggtgctattggacttcctggacctcctggtgct cagggtgagaagggagagtctggtccctctggagtcgttggaccctctggtcctcgtggt gcccctggtgagcgtggagagactggacctgctggacctgctggattcgctggacctcct ggtgctgatggtcagcctggtgccaagggagagactggtgacaccggaccaaagggagac gccggcccttctggacctcctggacctgtcggatctgccggtcctcagggacctgctggt gctactggacccaaaggtgctcgtggtggtgctggatctcctggtgctactggtttccct ggacctgccggcagagttggaccccctggcccctctggagctgctggaccccctggaccc cctggatctgttggaaaggatggaccccgaggatctcgtggtgagaccggccctgctggt cgccctggtgagtctggtgctgccggtgctcccggtcccagtggagaaaagggatcccct ggctctgacggatcccctggtgcccccggtctgcctggaccccagggtctcactggaggg agaggtattgtaggtctcactggacagcgtggagagcgtggttcccctggtatccctgga cccgctggtgagcctggtaagcagggaccttctgggcttgttggtgagcgtggaccccct ggacctgctggaccccctggactgtctggtgcccccggagaggctggtcgtgagggatct cctggtcatgatggtgctcctggtcgtgacggtcctcctggccccaagggagaccgtggt gagagtggcatggctggaccccctggacctcctggtgctcctggagcccccggaggtgtt ggcccctctggcaaatccggtgaacgcggagagagtggtcctgctggtcccgttggtcct gctggtattggtgggccccgtggttctgctggccctgctggtgctaagggagacagagga gaggctggtgaggctggagatagaggccacaagggacacagaggactcagcggacagcct ggtctgcctggacctcctggagttcatggagacagaggacccgctggtgcttccggacct gctggacccagaggaccatctggaaacaacggttcccctggtaaggatgggcagaacggt atgcccggacccatcggaccccctggacctcgtggtcgcaatggagagttgggaccttct ggtcctcctggacctcctggaccccctggacctcctggagcccctggcagtgcctttgaa ttcgtcgccccaccccagcaggagaagggcccagatcctctccgtggtggctaccgcgct gatgaccccaacatgatgcgcgaccgcgacatggaggttgacaccaccctgaagaccctg acccagaaggtcgagaatatccgcagccccgatggctcccagaagagccctgctcgcatg tgccgtgacctgaggatgtgccaccctgaatggaagagcggcacatactgggtagatccc aaccagggctcttctctggacgccatccaggtccactgcaacatggagactggagagacc tgcgtctaccccatcgattccaacatccccatgaagaactggtacctcagcaagaacctc agagagaagaagcacatctggttcagcgagtccatgacaggtggattccagttccagtat ggcaccgagggagctgatcctgaggacgtcaacatccagatctccttcatgcgcctgatg tccaaccaggcctcacagaacgtgacatatcactgcaagaacagcatcgcctacatggat actgcaacaggcaacctgaagaaggccctccttctccagggctccaacgatgtcgagatc agagccgaaggcaacagtcgctttacatacagcgtcagtgaggatggctgctcgtcacac actggcacatggggcaagacagtcatcgactacaagacatcgaaaacatcccgactgccc atcattgacattgctcctatggatgttggtgcacccgatcaggaatttggcgttgaagtt ggccccgtttgcttcttgtaa

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