Gambusia affinis (western mosquitofish): 122823236
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Entry
122823236 CDS
T07758
Symbol
polr3a
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1 isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03020
RNA polymerase
gaf04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122823236 (polr3a)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
122823236 (polr3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122823236 (polr3a)
Enzymes [BR:
gaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122823236 (polr3a)
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
122823236 (polr3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
122823236
NCBI-ProteinID:
XP_043958584
LinkDB
All DBs
Position
LG20:16852345..16876065
Genome browser
AA seq
1402 aa
AA seq
DB search
MVKEQFRETDVAKKISHICFGMKSAEQMRKQAHIQVVSKNLYSQDNKRTPLPYGVLDHRM
GTSEKDRPCLTCGKNLADCLGHYGYLDLELPCFHVGYFKAIIGILQMICKTCSSVMLTKE
DKQQFMDYLKRPNLAYLQKRGLKKKISDKCRKRTICLNCGTFNGSVKKCGLLKIIHEKYK
TTKKVVEPFVSDFLQSFDIAIEHNKLMEPLLPRAQENLNPLVVLNLFRRIPAEDIPLLLM
NPEAGKPADLIITRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTG
AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
VDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANLELMRKLVRNGPDVHPGANF
IQTRHTQIKRFLKYGNREKIAQELRIGDVVERHLIDGDIVLFNRQPSLHKLSIMAHIAKV
KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIA
AIQDFLTAAYLLTLKDTFFDRSKACQIVASILVGKDEKIRISLPRPAIIKPITLWTGKQI
FSVILKPSKDCPVNANLRTKGKQYCGKGEDLCHNDSFVVIHNSELMCGSMDKGTLGSGSK
NNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGTGLLKAKQDLLDDG
YRKCDEYIEALQTGKLQQQPGCSAEETLEALILRELSVIRDRAGSACLRELDKSNSPLIM
ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYS
GLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQF
IYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYTCPNEPALSQNELVLTADSITKKADFLC
CRDSFLEELTETGAEKYLEEIKKFIKTTSERIKKTRDKYGINDNGTTEPKVLYQLDRITP
TQLEKFLGTCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVP
RIKEIINASKNISTPIITAHLDVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFI
LVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPSDIAVHGEAVVCVSPRENNKSSMYYV
LQSLKEELPKVVVQGIPEVSRAVIHIDEQSGKNKYKLLVEGDNMRAVMATHGVNGSRTTS
NNTYEVERTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGL
AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADK
NPTPVTRPLLFDNADFHIPLFT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggaacaattcagagagacagatgtggcgaaaaaaataagccacatctgcttt
gggatgaaatctgcagaacagatgcgaaagcaggcccacatccaggtggtcagtaaaaat
ctgtacagccaagataacaaacgcactcctttgccttatggagtgttggaccaccgaatg
ggaaccagtgagaaagacagaccatgtctgacatgtgggaaaaatctggccgattgttta
ggacattatggatacctggatttggagctgccctgctttcatgttggctacttcaaagca
attattgggattttgcagatgatttgcaagacatgttcgagtgtaatgctgaccaaagag
gacaaacagcagttcatggattacttgaaacggccaaacttggcctacctgcagaaaaga
ggcctgaagaagaagatttctgataaatgccgcaaaaggacaatttgcttgaactgtggc
actttcaatggatctgtgaaaaagtgtggcttgcttaagatcatccatgagaagtataaa
acaaccaaaaaggtggtggagcccttcgtgtctgattttctgcagtcctttgatattgcc
attgagcacaacaaactaatggagcctttattgccaagagcacaggaaaatttgaaccct
ctggttgttctcaatctgtttcggagaattcccgcagaagacatccctctactgttgatg
aacccagaggcggggaaacctgcagatctcattatcacccgtctgcttgtgccgcctctc
tgcatccgaccgtcagtggtcagcgatctgaagtcgggtaccaatgaggacgatctgacc
atgaagctgacggagataatcttcctaaatgatgtcatcaaaaagcatcgaatgactgga
gcaaaaacccagatgataatggaggattgggacttcctgcagctccagtgtgccctttac
atcaacagtgaactttctggcattcccctcaacatggcacctaaaaagtggaccagaggc
tttgtgcaaagactaaagggcaaacaaggtcgattcagaggaaacctctcaggaaaaaga
gtggacttctctggaagaactgtcatttcccctgacccaaacctaaggattgatgaggtg
gctgtccctgttcacgtggctaaaatcctgacatatccagagaaggtaaacaaagccaat
ctggaactaatgaggaagcttgttcgtaacggcccagacgttcaccccggagccaacttt
atccagactcgtcacacacagataaaaagatttttgaaatacgggaaccgtgaaaagata
gctcaggagctgaggattggtgacgtggtggaaagacatctgattgatggagacattgtc
ctcttcaatcgacaaccttctctgcacaaacttagcattatggctcacatagctaaagtc
aaaccacacaggacatttcggtttaacgagtgtgtgtgcacgccgtacaatgccgacttt
gatggagatgaaatgaatctccacttgcctcagactgaagaagccaaagctgaagccctg
gtcctgatggggactaaagctaaccttgttacaccaagaaatggtgaacctctgattgct
gctatccaggacttcctgacagctgcgtacctgttgacgctgaaggacaccttttttgat
agatcgaaagcctgccagattgttgcatcaatacttgtgggaaaagatgaaaaaatcagg
atctctctccctcgccctgctataataaagccaattactttgtggacaggtaaacagatc
ttcagtgtcattttgaagccaagtaaagattgtcctgtcaatgcaaacttgcggaccaaa
ggcaaacagtactgtgggaaaggagaggatctctgtcacaacgactcttttgttgtgatt
cacaacagtgagctgatgtgtggaagcatggataagggcaccctgggatccggctcaaag
aacaacattttttacatcttgctaagagactggggacagctggaggctgccaacgccatg
tcccgcctggcaagactcgctccggtctatctctccaacagaggcttctcgataggaatc
ggtgatgtgactcctgggacgggtttgttgaaagccaaacaggacctgttggatgatggc
tacaggaagtgtgatgaatacatcgaagctctgcagacagggaagctgcagcagcagccc
gggtgctcagcagaggaaactctggaggctctcatcttgagagaactttctgtgatcaga
gaccgagctggcagtgcctgtctgagggagcttgataagagtaacagccccctcattatg
gctctctgtggttccaaaggatccttcattaatatctcccagatgattgcctgtgtgggt
cagcaggctataagtggctctcgagtcccggatggttttgaaaaccgctccttgcctcac
tttgaaaaacactcaaaactgcctgctgccaagggttttgtggccgacagcttctattct
ggtctgacacccactgagttcttctttcacaccatggccggtcgagagggtctggtggat
actgctgtcaaaacggcagaaactggatacatgcagaggcgtctggtgaagtctcttgag
gatttgtgctctcagtatgacctgacggtgcgcagctctacaggtgacatcatccaattt
atttatgggggcgatggcttggatccggctgcaatggaaggaaaggatgaaccgctggag
tttaagagagtcctggacaatattagggcggtctacacttgcccaaatgagcctgccctc
agtcagaatgagctcgtcctcactgctgatagcatcacaaaaaaggcggactttttgtgc
tgcagagacagcttcttggaggaattaacagagactggtgcagagaagtacctggaggag
ataaagaaatttataaagaccacgtcagagagaatcaagaagaccagagacaagtatggc
atcaatgataacggaaccactgagccaaaggttctctatcagttggaccgaattacccca
acccaactagagaagtttttaggaacctgcagagacaagtatatgagagctcaaatggag
ccaggttcagcagttggagctctctgtgcccagagcattggagagccaggcactcaaatg
acactgaaaacctttcacttcgctggtgtggcgtcgatgaatatcactctgggggtacct
cgcatcaaagaaattattaatgcttccaagaatataagcacccctataatcacggctcac
ttggatgtggaagacgacgcagactttgcccggctggtgaaggggagaattgagaaaacg
cttctgggcgagatttcagagtacattgaagaagttttcctcccagatgactgcttcatc
ctagtgaagctgtctctagagagaataaggctgctgcggttggaggtgaatgcagaaaca
gtgcggtactcgatatgcatgtcgaagctgcgagtgaagcccagcgacatcgccgtgcac
ggtgaggcggtggtctgcgtgtcgccacgggagaacaacaaaagctccatgtactatgtt
ctgcagtcattaaaagaagaacttccaaaggtggtggttcaggggatacctgaagtttcc
cgagccgtcattcacatcgacgaacaaagcggaaagaacaagtacaaactcctggttgaa
ggcgacaacatgagagctgtcatggcaacccacggtgtcaacgggagccggaccacctca
aataacacatatgaggttgaaaggactttgggtattgaggctgcaagatccaccatcatt
aatgagattcagtacaccatggtgaaccacggcatgagcattgatcgccgtcacgtcatg
cttctggcagatctcatgtcctataagggagagatcctgggaatcaccaggtttggacta
gccaaaatgaaggagagtgtcctcatgctggcttcgtttgagaaaacagccgaccatctc
tttgacgccgcctacttcggacaaaaagactctgtctgcggtgtgtctgagtgcatcatt
atgggaattccaatgaacatcggaacaggattgtttaaactcctacacaaggctgacaag
aatcccactcccgtcaccaggccactcctctttgacaacgcagactttcatatacctctg
ttcacgtag
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