Gambusia affinis (western mosquitofish): 122823265
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Entry
122823265 CDS
T07758
Symbol
gspt1
Name
(RefSeq) LOW QUALITY PROTEIN: eukaryotic peptide chain release factor GTP-binding subunit ERF3A
KO
K03267
peptide chain release factor subunit 3
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122823265 (gspt1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122823265 (gspt1)
03012 Translation factors [BR:
gaf03012
]
122823265 (gspt1)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122823265 (gspt1)
Translation factors [BR:
gaf03012
]
Eukaryotic type
Release factors
122823265 (gspt1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
PAM2
Motif
Other DBs
NCBI-GeneID:
122823265
NCBI-ProteinID:
XP_043958635
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All DBs
Position
LG20:23515186..23525905
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AA seq
681 aa
AA seq
DB search
MFFCPPVRKTRWFQWRRYAAPSRRQRDSQLAPSAQLLTDPYAGESQTETLWELHQASSSE
SEPKQQLIASEQNRRTGPPRLGGRPTSCSTPEEEESMDSRDTAPDSWEQEEYAEAPAPSA
ELPAAFAALNVNAKPFVPNVNAPVFVPSFLQGSSAGIPAADGSPEPAASMEVADTAAPVE
NGNTEADMAAEEETWEQKEEPGGGEGGGGQEELGTEGGGEEGGATGREDEEMMEEEEEEI
PLPKVAPPLPDAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKN
RETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQAD
LAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLVNKMDDPTVNWSLERYEEC
KEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKDPVPECPWYTGLPFISHLDSLPNFNRS
TDGPVRLPIVDKYKDMGTVILGKLESGSISKAQQLVMMPNRHTVEVLSLLSDDVETDDAG
PGENLKLRLKGIEEEEILPGFILCSPDNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIH
TCIEEVQITALICLVDKKSGEKSKMRPRFVKQDQASPAXRVTPAICLETFKDFPQMGRFT
LRDEGKTIAIGKVLKLVPEKD
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgtttttctgtccgcctgttagaaaaacacgttggtttcagtggcggcgctatgccgcc
ccctcgcggcgccagcgggactcgcagctcgctcccagcgcacagctactcacggatcca
tatgctggtgaaagccagactgaaacactatgggaacttcatcaagcgagttcctccgag
tctgaaccgaagcagcaactcattgcgtctgaacagaaccgcagaaccggcccacctcga
ctcggagggcggcccacaagttgttcaactccagaagaagaagaatctatggactcgaga
gacacagccccggattcatgggagcaggaggaatatgccgaggccccggctccctcggcg
gagctcccagccgccttcgccgcactcaatgtgaacgccaagccgttcgtccccaacgtg
aacgccccggtgtttgtgccgagcttccttcagggcagcagcgccggaatcccggctgca
gacggttctccggagccagctgctagcatggaggtggcggacacagccgcgccagtggag
aacggaaacacagaggctgacatggcggcggaggaggaaacgtgggagcagaaggaggag
cccgggggaggcgagggaggcggcggacaggaggagctgggaacggagggaggcggcgaa
gaaggcggcgccacggggagagaggatgaggagatgatggaggaggaagaggaggaaatc
cccctccctaaggtggccccgccgctgcctgatgctcccaagaaggaacatgtgaacgtc
gtcttcatcggtcacgtcgatgctggtaaatccaccatcggagggcagatcatgtacctc
actgggatggtggacaagcgaacactggagaaatacgaacgagaggcgaaggagaagaac
agggagacgtggtatctgtcgtgggctctggacaccaaccaggaggagagagacaagggc
aagacggtggaggtggggagggcttactttgagacggagaagaaacatttcaccatcctg
gacgcgccgggacacaagagcttcgtccccaacatgatcggcggcgcgtcgcaggccgac
ctggcggttctggtcatttcggccagaaaaggcgagtttgagacgggctttgagaagggc
ggccagacgcgggagcacgccatgctggctaaaacagccggagtcaaacatctgatcgtt
ctggtcaacaagatggatgaccccaccgtgaactggagcctagaaaggtatgaggagtgc
aaagagaagctggtgccatttttaaagaaggtgggcttcaacccaaagaaggacatccac
ttcatgccttgttctggactcacaggtgccaacctcaaagacccagtgcccgagtgtccc
tggtacacgggtctgcccttcatctcccacctggacagtttgccaaacttcaacagatcc
accgacggccccgtcagactaccgatagtggacaagtacaaggacatggggacggtgatc
ctggggaagctggagtccggctccatcagtaaagctcagcagctggtcatgatgcccaac
aggcacacggtggaggttctgagcctgctgagcgacgacgtggagacggacgacgccggg
ccgggggagaacctgaagctgcggctcaaagggatagaagaagaagagattctgccaggc
ttcatcctctgcagcccagacaacctgtgccactcgggccgcaccttcgacgctcagatc
gtcatcattgagcacaagtccatcatctgtcccggttacaacgccgtgctgcacatccac
acctgcatcgaagaggttcagatcacggctctgatctgcctggtggataagaagtctggc
gagaagagcaagatgcggccgcgcttcgtgaagcaggaccaggcatcgcctgccnngcgg
gtcacgccggccatctgcttagaaaccttcaaggacttcccccagatgggacgcttcact
ctgagagacgaagggaaaacgatcgccatcggcaaagtgctgaagctggttccagagaag
gactaa
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