Gambusia affinis (western mosquitofish): 122823633
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Entry
122823633 CDS
T07758
Symbol
katnb1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
gaf04812
]
122823633 (katnb1)
Cytoskeleton proteins [BR:
gaf04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
122823633 (katnb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
Katanin_con80
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_WDR19_1st
PROPPIN
Beta-prop_RIG_1st
RMC1_N
WDR54
Beta-prop_WDR35_TULP_N
Beta-prop_IP5PC_F
Beta-prop_VPS8
Ge1_WD40
Beta-prop_NWD2_C
Beta-prop_LRRK2
WD_LRWD1
Beta-prop_IFT122_2nd
Cytochrom_D1
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
122823633
NCBI-ProteinID:
XP_043959392
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All DBs
Position
LG02:687763..695612
Genome browser
AA seq
685 aa
AA seq
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MAAASSTKISWRLQEFEAHSRTVSCLSLGKNSGRLLATGGEDCRVNIWAVSKANCVMSLT
GHKNPVECVQFSVSEEQVAAGSQSGSIRVWDLEAAKILRTLMGHKANVTGLGFHPFGNFL
ASSSVDTNIKLWDVRRKGYVFRYKGHTEAVRSLAFSPDGKWLASASDDCTVKLWDLFQGK
TITEFKSHSAAVSAVQFHPNEYLLASGSADRSIKLWDLEKFTRVGSLEGDTSAVRCLLFS
PDGSCLYSGASDSLRVFGWEPDRCFDTVPVGWGKVSDLAVCNQQLIGVSHQLSSVSSFVV
DLNRVKRSGGAVIQGIVRDDRPLTDPVEPRTAALRRNYDRPATACGSHSRMKRSDTDRRS
PDGERRSQSEDEAEDKQPSAEIHNADDYREIFQPKRAISRTPPRASEPFPAPPEDESVAA
VGRQLKDMTLPSPDKQQAPPLATSTPVQRVEPTVVAFTKPCSPAPSSQPAPPTRPPPLPR
VIPSSRNEPLGLNVADFLPSSVNHRGGALTDDGALAQINKGHDTMCVMLSSRQRNLQTVR
SVWTRDDVKSALDAAVSMNDLSIVVDVLNIVNLQPSLWKLDLCTTVLPQIDKLLQSKYES
YMQTGSTSLKLIMKHFWTLICDTLRASPAVGVDITGEERHQKCRECCRYLKNLSNVVKNR
AGQAGRHGSAFKELQLLMAPLDEAL
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgccagcagcaccaagatctcatggcgcctgcaggagttcgaggcccattcc
agaaccgtgtcctgcctgtctctggggaagaactcgggccgcctgctggccaccgggggc
gaggactgccgcgtcaacatctgggccgtcagcaaggccaactgcgtcatgagcctgacg
ggtcataagaacccggtggagtgcgtccagttcagcgtgtcagaggagcaggttgcagct
ggttcccagtctggatccattcgagtctgggacctggaggctgccaagattctgcggact
ctgatgggacacaaagcgaacgtcaccggtctcggcttccacccgtttggaaactttctg
gcctccagttctgtggacaccaacataaagctctgggacgtccggaggaaaggatacgtg
tttcgctacaagggtcacacagaggctgtgaggagtttggccttcagtccggacgggaag
tggttagcctcggctagcgacgactgcacagtgaagctgtgggacctgttccaggggaaa
accatcaccgagttcaagtcgcactcggcagccgtcagcgcggtccagttccatcccaac
gagtacctactggcgtccggcagcgccgacaggagcatcaagctgtgggacctggagaag
ttcaccagggtcggctctctggagggagacacgtctgccgtgaggtgcctgctgttcagc
ccggacggctcctgcctttacagcggcgcctcggactccctgcgggttttcggctgggag
ccggatcgatgcttcgacacggttccggtcggctggggaaaagtatcggacctggccgtc
tgcaaccagcagctgatcggcgtgtcccaccagctgtccagcgtctcgtccttcgtggtg
gacctgaaccgggtgaagcggagcggtggtgccgtgatccaggggatcgtccgggacgac
cggccgctcaccgatccggtggaaccccgaacggcggcgcttcggcgcaactatgacaga
cccgccaccgcctgcggctcccacagcaggatgaagcgctcagacactgataggcggagt
cccgacggagagaggcggagccagagcgaggacgaggcggaggacaagcagccgtcagcg
gagatccacaacgccgatgactacagagagatcttccagcccaaacgcgccatctctcga
actcccccccgggcgtcggagccgtttcctgctcctcctgaagacgagagcgtggcggcc
gtcgggcggcagctgaaggacatgacgctgccatctcccgacaagcagcaggctccgccc
cttgccacctccacccccgtccagagggtcgaacccacagtggtcgccttcaccaagccg
tgtagccccgcccccagcagccagcctgccccgcccaccaggccgcctccgttgccgcgg
gtgatcccgagcagccgcaacgagccgctgggactcaacgtggccgacttcctgccgtcc
tcagtcaaccaccggggcggcgctctcaccgacgacggcgctctggcacagatcaacaaa
ggtcacgacaccatgtgtgtgatgctgagcagccgccagcgcaacctgcagacggttcgg
tccgtctggacccgcgacgacgtcaagagcgctctggacgccgccgtgtccatgaacgat
ctgtccatcgtagtggacgtcctgaacatcgtcaacctgcagccctccttgtggaaactg
gacctctgcaccacggttctccctcagatcgacaagctgctgcagagcaaatacgagagc
tacatgcagaccggctccacgtcgctgaagctcatcatgaaacatttctggaccctgatc
tgcgatacgctcagggcgtcgccggcggtgggggtggacatcaccggggaggagcggcac
cagaagtgccgggagtgctgccgctacctgaagaacctgagcaacgtggtgaagaaccgg
gccggccaggccggtcgccatggcagcgccttcaaggagctgcagctgctgatggcgccg
ctggacgaggcgctgtga
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