Gambusia affinis (western mosquitofish): 122823640
Help
Entry
122823640 CDS
T07758
Symbol
smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122823640 (smarcd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122823640 (smarcd2)
03036 Chromosome and associated proteins [BR:
gaf03036
]
122823640 (smarcd2)
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122823640 (smarcd2)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122823640 (smarcd2)
PBAF complex
122823640 (smarcd2)
GBAF(ncBAF) complex
122823640 (smarcd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
122823640
NCBI-ProteinID:
XP_043959399
LinkDB
All DBs
Position
LG20:complement(20280163..20292572)
Genome browser
AA seq
498 aa
AA seq
DB search
MAARGGFPAPQMNPTVSPMNVGHIPGMRMPGMPQSPAGYPRSMTSTPQYHQRSGMPPSRL
GGLIGSMGGQMPGPSYGGGSIPMRPGMGHPGMDASRKRFLQQQQEALGGPRRGAKRRKMA
DKVLPQRIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPIMQKRKLRIYISNT
YTPSKPEGEESEKVSSWELRVEGKLLEEPGKQKKKFSSFFKSLVIELDKELYGPDNHLVE
WHRMPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRASIMQ
ALWLYIKNNKLQDSHEKEYINCNRYFRQIFGCPRMKFSDIPMKLAGLLHHPDPIIINHII
SVDPTDQKKTACYDIDVEVDDPLKGQMNSFLSSTTNQQEIAALEMKIHETIEYINQLKTE
RDFMLSFSNNPQEFIKDWLKSQCRDLKLMTDVAGNPEEERRTEFYQEPWVPEAVGRYVYS
KVQQRKQELEQVLGIRLT
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaagagggggcttcccggctccccagatgaatccgactgtgagccccatgaat
gttggccatatcccgggcatgaggatgcctgggatgccgcagtctcccgcgggttacccc
cggagcatgaccagcactccccaataccaccagcgatctgggatgcctcctagcagattg
ggaggcctcataggatccatggggggtcagatgccgggcccttcgtacggcggcggcagc
attccgatgcgtccgggcatgggccatcccggcatggacgcctcaaggaaacgcttcctt
cagcagcagcaggaggcgctgggaggcccaagaagaggagcaaaaaggcgcaaaatggcc
gacaaggttcttcctcaaaggattcgagatctggtccccgagtctcaggcctacatggat
cttctggcctttgaaaggaagctggatcagactatcgctcggaaacgcatggagattcag
gaggccatcaagaagccgatcatgcaaaagcgcaagcttcgcatctacatttccaacact
tacactcccagcaagccggagggagaggaatctgagaaagtgtcctcctgggagctgaga
gtggaaggcaaactcctggaggaacctggtaagcagaagaagaagttctcctctttcttc
aaaagtctggtgattgagctcgataaggagctttatggacccgacaatcacttagtagag
tggcacagaatgcccaccactcaggagacggatggtttccaggtgaaaaggccgggtgat
gtgaatgtcaaatgcactcttctgctcatgctcgaccaccagcccccgcagtacaagctg
gaccctcgcttggcgcgtcttctgggcgttcacacgcagactcgggccagcatcatgcaa
gctctctggctctacatcaagaacaacaagctgcaggacagccacgagaaggagtacatc
aactgcaaccgctacttcagacagatctttggctgtccacgcatgaagttctctgatatt
cccatgaaactagcaggcctgctgcaccaccccgaccccatcatcatcaatcacatcatc
agtgtggaccccaccgatcagaagaaaacggcctgttatgatatcgacgtggaggtggac
gaccctctgaagggccaaatgaacagcttcctgtcctccaccaccaaccaacaggaaatt
gctgctcttgaaatgaagatccatgaaacgattgaatacattaaccagctgaagacggag
agagacttcatgctgagcttcagcaataatccacaagagttcatcaaggactggctgaag
tctcagtgcagagatctgaagctgatgaccgatgtagcaggaaacccagaagaagagcgg
agaaccgagttctaccaggaaccctgggttcctgaagcagtgggcagatatgtctattcc
aaagtgcagcagaggaagcaggagttggagcaagtgttgggcatccgactcacctaa
DBGET
integrated database retrieval system
