Gambusia affinis (western mosquitofish): 122824234
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Entry
122824234 CDS
T07758
Symbol
col11a1a
Name
(RefSeq) collagen, type XI, alpha 1a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122824234 (col11a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gaf00536
]
122824234 (col11a1a)
Glycosaminoglycan binding proteins [BR:
gaf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122824234 (col11a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
122824234
NCBI-ProteinID:
XP_043960530
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All DBs
Position
LG21:17122998..17215269
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AA seq
1810 aa
AA seq
DB search
MEMQRWSTRWKTKRWLMDSTRTAFITLTLLLQAACVRAGEPVDVLKALGFQNYPDGVTKV
TGFCANRRASKSDSAYRIARQIQINAPTSQLFPGGVFPEDFSILTTVRPESGLQSFLLSI
YNEQGVQQLGVEVGRSPAFLYEDQTGKPVPEDYPLFTSLNLSNGKWRRVAISVEKKTVTI
IVDCTRKITKPLLRSDQGSISTNGITVFGTRILDEDVFQGDIQQLLIVADPKAAYDYCDH
YSPDCDTPHKDSLQAQEPDEEYITDDIDYRQFYEYSEGPTDSVPTDEYSEKQLNNVEGDY
YTDIDYGTLDGTQTQSPVATRGPSEAVKEDFIGARVTEAPTLPPEPGTVLETGDNSETGA
EAYDFKEYDLNEYDLGKLDNKYDYGTYDEYGPHPSIAPTAYDEEVGPGVAAETDFSESTI
AGSQAVFGQKGEKGEPAVIEPGMLIEGPPGPPGPSGLPGPSGLQGPPGPAGDPGDRGPPG
RAGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPMG
LTGRSGPVGPPGSGGLKGESGDPGPQGPRGIQGPPGQPGKVGKRGRAGADGARGMPGEPG
SKGDRGFDGLPGLPGEKGHRGEPGPMGPAGAPGEDGQRGEDGEIGPRGLAGESGPRGLLG
PRGPPGPPGVPGVAGVDGPPGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGEKG
PQGRSGLPGLPGADGPPGHPGKEGPPGEKGSQGPLGPQGPLGYPGPRGVKGADGVRGLKG
SKGEKGEDGFPGFKGDMGIKGDRGEIGMPGSRGEDGPEGPKGRAGPNGESGPLGPAGEKG
KLGVPGLPGYPGRQGPKGSSGFPGFPGSNGEKGARGIAGKSGPRGQRGPTGPRGARGARG
PTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETG
FQGKTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQG
SPGKDGPPGLRGFPGERGLPGATGPPGLKGGEGPQGPPGPVGSPGERGSAGPAGPIGLSG
RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEAGEPG
QKGSKGDKGEQGPPGPAGVQGPVGAPGPAGADGEPGPRGQQGMFGQKGDEGPRGFPGPPG
PIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPIGSVGEKG
EQGEAGNPGPPGEPGTGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPG
DPGPPGEPGVAGTDGESGEKGEDGEPGQPGPPGPSGEAGPPGPPGKRGPPGALGAEGRQG
EKGAKGEAGAEGPAGKTGPVGPQGPPGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPMG
PPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGTPGGKGDSGISGAAG
PLGPPGPPGLPGPQGPKGAKGSSGPAGPKGDTGSIGPPGPPGPPGEVIQPLPIQSPKKTK
RSSDMQSDAARSFVDYGEGMEDIFGSLNNLKQEIERMKYPMGTQNNPARTCKDLQLCHPE
FTDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSNGVRISSWPKEVPGSWFSEFK
RGKIFSYVDADGNPINMVQMTFLRLLTASARQNFTYSCHQSVAWHDAASDSHDKALRFLG
ANDEEMSFDNNPFLQAISDGCSTRNGYGKTVMELNTPKIDQVPIVDVMLTDFGDPNQKFG
FEVGPVCFLG
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaacgctggcttatggattccact
agaactgcattcatcactttaacactgcttctgcaggctgcttgtgtcagagcaggagag
ccagtggatgtcttaaaagcgttaggatttcaaaattaccccgatggagtgacaaaagta
acgggattttgtgcaaaccgaagagcatcgaagtcagactctgcctacagaatcgccagg
cagatccagatcaacgctcccacctcacagttattccctggtggcgttttcccggaggat
ttctccatcctgaccaccgtgcgccccgagtctggcctccagtccttcttgctgtccatt
tacaatgagcaaggagttcagcagctaggtgtagaggtgggacgctcacctgctttcctg
tatgaggatcaaactggcaagccagtcccggaggactaccccctgttcacctctctcaac
ctttctaatggaaagtggcgccgtgtggccatcagtgttgagaagaagacggtcaccatc
attgtggattgtacaaggaagatcaccaagcctctgctcaggagtgaccaaggctccatc
agcaccaacggcattacggtgtttggcaccaggatcctggatgaggatgttttccagggc
gacatccagcagctcctgattgttgctgatcctaaagcagcatatgactactgtgaccat
tacagcccagactgtgacacgccgcacaaggattcgcttcaggcccaggagccagacgaa
gagtacattactgacgatatagattacagacagttctatgaatactctgaaggaccaaca
gactccgtcccgacagacgaatactctgaaaaacagctaaacaatgtagagggagattac
tatacagacattgactacggaactctagatggtactcagactcagtcacctgttgccacg
cgcggaccaagcgaggctgtaaaggaggattttatcggggcgcgtgtcaccgaagcccct
actctccctccggagcccggcactgtgttggaaacgggggacaactcggagaccggtgcg
gaagcgtatgactttaaggagtatgacctgaacgagtatgacttgggcaagttagacaac
aagtatgattatgggacatacgatgagtacggcccccacccatctatagccccgacagcc
tatgatgaggaagtggggcccggggtcgctgccgaaaccgacttttctgaaagtacaatt
gctggttctcaagcagtcttcgggcagaagggcgagaagggcgagccggctgtgatcgaa
cctggcatgctgattgaaggaccaccaggaccacccggcccatctggtcttccgggacca
tcaggccttcagggacccccgggcccagccggagatcctggtgacagaggtcctcctggc
cgcgccggtctccccggcgccgacggcttaccgggtcctccaggtaccatgctgatgctc
ccatttcgcttcggtggggacggcgagaagggtccggtggtgtcggcccaagaagcccaa
gcacaggccatcctctcccaggccaggctggcgatgaggggacctcctgggccaatgggt
ttgactggaagatctggaccggtgggtcctcctggctcaggtgggctgaagggtgaaagc
ggagaccccggtcctcagggcccacgtggcattcaaggaccccctggacaacctggcaaa
gttggtaaaaggggtcgggctggtgctgacggcgctcgtggaatgcccggagagccaggc
tctaagggtgaccgaggctttgatggacttcccgggctgcctggagaaaagggccacagg
ggcgagccggggccaatgggaccagctggagccccaggagaggatggacagagaggtgaa
gacggagagattgggcccagagggttagctggagagagcgggcccagaggcctgctggga
cctcgcggtcctccgggaccccccggagtgccgggcgttgccggagtggacgggccaccg
ggtcccaaaggcaacatgggaccacaaggggaaccgggcccaccgggtcagcagggaatc
cctggaacacagggcctccccggtcctcaaggtccgatcggaccacctggagaaaaaggc
cctcagggcaggtcgggacttcctggactgcctggagctgacgggcctcctggtcatcct
ggtaaggagggtccacccggagagaaaggttctcagggtccactgggtcctcagggccct
cttggttatcctggcccccggggtgtaaagggggccgacggagttcgtgggctaaaggga
tcaaaaggagaaaagggcgaggacggtttcccaggttttaaaggagatatgggaatcaaa
ggcgaccggggtgaaatcggcatgcctgggtcccgtggagaggatggtcctgagggacct
aaaggcagagccggccccaacggagagtcggggcctctcggtccagcaggagagaaaggc
aaacttggtgtcccaggattgccaggttatcccggacgacagggaccaaagggctcgagt
ggattccccggcttccctggatcaaacggcgagaaaggagcacggggcattgctgggaaa
tctggtcctagaggacagagaggtccaacggggccccgcggggctcgaggagccagaggt
ccaacgggcaaacccggtcccaagggcacagcaggaaacgacggcccccctggcccgcct
ggtgagagaggacctcaaggacctcaggggccagtgggcttccctggaccaaagggcccc
ccgggaccacctgggaaggacgggcttcccggacaccctggacagcgtggagagacgggt
ttccaaggaaaaactggccccccaggaccaggaggtgttgttgggcctcagggacccact
ggagagaccggtcctgttggtgagcgcggacatcctggacccccaggcccacctggagag
cagggtcttccgggtgctgctggcaaggagggagccaagggtgatcctggaccgcaaggc
tcccctggtaaagacggtccgccgggccttcgcggcttccctggagagagaggtctgccc
ggtgccacgggcccacctggtctgaagggtggagagggaccccagggtccacccggtccg
gttggttctcctggtgaaagaggtagtgctggcccagccggcccaattggtttatctggt
agacctggtcctcagggtcccccaggtcctgctggagagaaaggtgctcctggtgagaaa
gggccgcagggcccagccggacgtgacggtgtccagggtcctgtcggtcttcctggcccc
gctggacctcaaggcccacctggagaggacggtgacaagggagaggctggggagccgggc
cagaaaggaagcaaaggtgacaagggagagcagggcccccctggaccggctggtgttcaa
ggtcctgttggagccccaggtcctgctggagctgatggcgagccaggtcccagaggtcag
cagggcatgttcgggcagaagggagacgagggtccgagaggcttccccgggcccccgggc
cccattggtctacaggggcttcctggacctccaggtgaaaaaggagaaaacggcgacgtc
gggcccatgggtcctcctggtccccctggtcccagaggccctcagggtcccagtggagcc
gatggccctcaaggtcccccaggtggtgtgggccccataggatctgtgggtgagaagggc
gaacaaggcgaggctggaaacccgggaccacctggagagcctggaactgggggacccaaa
ggagagagaggagagaaaggagaggccggaccccccggagctgctggacccgccggcgcc
aaaggaccccctggagatgatggtcctaagggcaaccctggacctgttgggttccctgga
gacccaggaccccctggagagccaggtgtcgctggtactgatggagaatcaggagagaaa
ggagaagatggggagcccggtcaacctggacccccgggtccttctggagaggccggtcca
cctggtccacccggcaagagaggacctcctggagctttaggagccgagggccggcaagga
gagaagggcgccaagggtgaagcgggtgctgagggcccagctggtaagacaggacctgtt
ggaccccaaggacctcctgggaagcctggtccagagggtctgcgtggaatccctggccct
gtgggtgaacaagggctgcccggtgctccaggacaggacggtccaccaggtccaatgggt
ccgccaggtctgccgggcttgaaaggcgaccccggctccaagggtgaaaagggtcaccca
ggtttgatcggcttgattggaccccccggagagcaaggagagaagggagatcgaggtctt
cccggaccccagggcacccctggtggcaaaggtgactctggcatcagtggagctgctggt
ccccttggcccccctggtccccctggtctacctggtcctcaaggtccgaaaggagccaag
ggttcaagtggtcctgctggtccaaaaggagacactggttcaataggtcctccaggtcct
cctggcccaccaggtgaggtcatccagccccttcccattcagtcgcccaagaagaccaag
cgctccagtgacatgcagtcagacgccgccaggtccttcgtggattacggcgaaggcatg
gaggacatttttggctctctcaacaacctcaaacaggaaattgaacgcatgaaatacccc
atgggcacgcaaaacaacccggccagaacatgcaaagacctccagctgtgccaccctgag
ttcaccgatggtgagtactggattgatcccaaccaaggctgctctggagattcattcaaa
gtctactgcaacttcactgctgggggtgaaacctgcatctatccggataaaaagtccaat
ggggtcagaatatcctcgtggcctaaggaggttccaggttcatggttcagtgaattcaag
cgcggtaaaatattttcctatgtggatgctgacggaaaccccatcaacatggtacagatg
accttcctcagactactgaccgcctcagccaggcaaaacttcacctacagctgccaccag
tctgtggcgtggcacgacgcggccagcgacagccacgacaaggcgctgcgcttcctgggc
gccaacgacgaggagatgtctttcgacaataacccgttccttcaggccatctcagacggc
tgttcgacaagaaacggctacggaaagactgtgatggagctcaacactcccaaaatcgac
caggttccaatcgtcgatgtcatgttgactgatttcggggacccgaaccagaagttcggg
tttgaagttggacctgtctgcttccttggataa
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