Gambusia affinis (western mosquitofish): 122824515
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Entry
122824515 CDS
T07758
Name
(RefSeq) nuclear receptor ROR-alpha A-like isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gaf03000
]
122824515
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
gaf03310
]
122824515
Transcription factors [BR:
gaf03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
122824515
Nuclear receptors [BR:
gaf03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
122824515
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
122824515
NCBI-ProteinID:
XP_043961192
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Position
LG02:complement(2095882..2144627)
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AA seq
530 aa
AA seq
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MESSRQDSVTDAVRSRSQPGEAAEETPLPAASRTHSRSDSSGSSQSKGLSPAVKKTHASQ
IEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNASYSCPRQKNCQIDRTSRNRCQH
CRLQKCLAAGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQQAPSRTSPSVGSPIPDED
EPPSPPYTLCSAGLTDPTDDPAYFTDRTSPDGGSLIAKAESGTGDARCGGFYLDIQPSPD
QSGLDINGIKPEPLHDYRHGDDFFPYCSFSNGDAFPTLTLAEHDHLAQIICKSHLETCQY
LREELQEMSWQSFLQEEVEKYQNKPQEAMWQLCAVKITDAVQYVVEFAKRIDGFMDLCQN
DQIVLLKAGSLEVIFVRMCRVFDSQNNTVYFDGKFASPDVFKSLGCDDLISSVFDFAQSL
CSLQLTEEEFALFSAFVLLSADRSWLREKLQVEKLQQKTESALQHVLQKNRRDDGVLEKL
RCKASALRALCGLHSEKLAAFRTVYPDAVRTLFPPLYKELFAADLDGTLH
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgtcccgacaggattcggtgactgacgcggtaaggagtcgctcgcagcccggt
gaagccgccgaggagaccccgctccccgcagcgagcaggacgcacagccgctccgactcc
tccgggtccagtcaaagcaaaggtttgtcaccagctgtgaagaaaacacacgcttctcag
attgagatcatcccctgtaagatctgtggagataaatcctcagggatccactatggcgtc
attacctgcgagggctgcaagggtttctttaggcggagtcagcagagcaacgcctcgtac
tcgtgtccgcggcagaaaaactgtcagatcgaccgaacgagccggaaccgctgccagcac
tgtcgcctgcagaaatgcctggctgccggcatgtccagagacgccgtgaagttcggccgc
atgtcgaagaaacagcgggacagtttgtacgccgaggtccagaagcaccggctccagcag
cagcagcaggcgcccagccggacctcccccagcgtcggcagcccgatcccggatgaggac
gagccgccgtcccccccgtacacgctgtgctccgcgggactcacggacccgacagacgac
ccggcctacttcacggaccggacctcaccagacggaggatctctgatcgccaaggcagag
tcgggaacaggagacgcaagatgtggaggtttctacctggacatccagccgtctccggac
cagtccggactcgacattaacggaatcaaaccagagccgctgcacgactacagacacggc
gacgacttctttccttactgctccttcagcaacggagacgcgtttccaaccctgaccttg
gccgaacacgatcacttggctcaaatcatctgcaagtctcacctggagacgtgtcagtac
ctgagggaggagctgcaggaaatgagctggcagagtttcctgcaggaagaggtggagaaa
tatcagaacaagccacaggaggcgatgtggcagctttgtgcggtgaagatcacagacgcc
gtccagtacgtggtggagttcgccaaacgcatcgacggcttcatggatctctgccagaac
gaccagatcgtgctgctgaaagccggatcgttagaggtcatcttcgtacgaatgtgtcgg
gtttttgactctcagaacaacaccgtctacttcgatgggaaatttgcaagtcctgacgtt
ttcaaatcattaggctgtgatgatttgatctcgtcggtgtttgacttcgctcagagcttg
tgttcgctgcagctgaccgaggaagagttcgccctcttctccgcgttcgttctgctctct
gcagaccggtcgtggctgcgggagaagctgcaggtggagaagctgcagcagaaaaccgag
tcggccctgcagcacgtcctgcagaagaaccgcagagacgacggagttctggagaagctg
cggtgcaaggcgtcggcgctgcgcgctctctgcggcctccactcggagaagctggcggcg
ttcagaaccgtctacccggacgcggtccgaacgctcttccctccgctctacaaggagctg
tttgctgccgacctggacgggactctgcactga
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