Gambusia affinis (western mosquitofish): 122825048
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Entry
122825048 CDS
T07758
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122825048 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gaf03041
]
122825048 (cdc40)
Spliceosome [BR:
gaf03041
]
Complex C
Other components
Step II factors
122825048 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
WD40_WDHD1_1st
EIF3I
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
122825048
NCBI-ProteinID:
XP_043962040
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All DBs
Position
LG22:complement(10593486..10608861)
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AA seq
581 aa
AA seq
DB search
MSTAIASLASYGSDSDSENESESSTSIEKVDPNDPDATAHLKPLQSEPTMSLAVLNSAPE
VAVKEAVETGIHLDPSLKEVTYNPTYETMFAPEFGPMNPYKSQQMSAPRNMLSGYAEPAH
VNDFMFEQQRRTFSTYGYALDPSVDTHEASSCSYIGAVEEAEKNKGLTVFESGQKKPEKR
KKVKGGDAGEIDNFLGPWAKYVDEKDVAKPSEEELKELNEITAKRQKKGRNEDEAPGEEK
TILHVKEMYDYQGRSYLHVPQDVGVNLRSADAPDKCYLPKKQIHVWSGHTKGVSAIRLFP
RSGHLLLSSSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNNSGTQFLSAAYDRYLKL
WDSETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRTSEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccgccatagcttccctcgcttcctacgggagcgattccgactccgaaaacgag
tcggaatccagtaccagtatcgagaaagttgatccgaatgatccggatgctacggctcac
cttaaacctctgcagtctgaacccacaatgtctttggctgttcttaattctgccccggag
gttgctgttaaggaggctgttgagactggcatacacttggacccttcactgaaagaagtc
acttataacccaacatatgaaacgatgtttgcacctgagtttgggccaatgaatccgtat
aagtcccagcagatgtcggccccaaggaacatgctgtctggctatgcagaacctgctcac
gtcaatgattttatgtttgaacagcaaaggaggactttctctacttatggttatgcttta
gatccttctgttgacacacatgaagcttcctcttgtagctatattggtgctgtggaagag
gctgaaaaaaacaaaggactgactgtctttgaaagtggtcagaagaagccagagaaaagg
aagaaggtcaaaggtggggatgcaggagagattgacaacttcctggggccgtgggcgaaa
tatgtggacgaaaaagatgtggccaaaccatcggaggaagagctgaaagaactcaatgag
atcactgctaaaaggcagaagaagggaaggaatgaagacgaggctccaggagaagagaag
accattcttcatgtcaaagagatgtatgactaccagggcaggtcatacctccatgttcca
caggatgtgggcgtcaacttacgttctgcagatgctccagataagtgttacctgccaaag
aaacagattcatgtctggtctggacacactaagggtgtcagtgctatccgattatttccc
aggtctggtcatcttctgctctcttcttccatggactgcaagatcaagctgtgggaggtc
tatggagagaggaggtgtctccgcacatttattggtcacagcaaagcagtgcgagacatt
tgcttcaacaacagtgggactcagttcctcagtgctgcatacgaccgctaccttaaactg
tgggactctgagacaggccagtgtatctctcgcttcacaaacaggaaggtaccctactgc
gtcaagttcaatccagacgaggacaagcagaatctttttgtggctgggatgtcggataag
aagattgttcagtgggacatcaggacgagcgaggtggttcaggagtacgatcgccacctg
ggtgctgtcaacaccatcacctttgttgacgaaaatcgccgctttgtcagcacgtcagat
gataagagtctgcgagtctgggagtgggacatccctgtggacttcaagtacatcgctgag
cccagtatgcactccatgccagctgtgactctatctcccaatggtaaatggctggcatgc
cagtccatggacaaccagattcttatctttggagcccagaatcgcttcagactgaacaaa
aagaaaattttcaagggtcacatggtggctggctacgcctgccaagtggacttctcccca
gacatgagctatgtggtatcgggggatgcagatggaaagctgaacatctgggactggaag
accaccaagctctatcacaggatcaaggctcacgacaaagtttgcatcagtgctctgtgg
catccgcacgaaacctcgaaggtcatcacctgcggctgggatggacagatcaaactctgg
gactaa
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