Gambusia affinis (western mosquitofish): 122826044
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Entry
122826044 CDS
T07758
Symbol
sox5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gaf03000
]
122826044 (sox5)
Transcription factors [BR:
gaf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
122826044 (sox5)
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
122826044
NCBI-ProteinID:
XP_043963441
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Position
LG23:4912638..5163952
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AA seq
786 aa
AA seq
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MLLLSRETDPYSSMLTEPELPQECNRMSSKRPASPYGGTDGEVTMATSRQRVEDEESEGP
GGVIHLPLASYCGKVSPHSPPSRHLDSPPSTEHDGIKGSSLSPYPQHNATSPGKEEGGGG
GRPCSDGGSATGTLGTPERRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKD
KLLAMGSGHIGEIKGTPDSLAEKERQLMGMIGQLSSLREQLLAAHEEQKKLAASQMEKQR
QQMELAKQQQDQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAA
AQQGFLMPPGFNYKPGCSDPYPLQLIPTTMAAATPGLGPLQLQQLYAAQLAAMQVSPGTK
QHGGSLAPQANLGAHSPPTNSHPQGDKNRSSPSSNKNKDSEGAQPLNLSAKPKASESKSP
NSPPTSPQVPAAAAATTKLGPAGSMKHSAVPSSIGAPSTRVSSIADLLSSLSSTAYLNDH
EAVSKAFAEARQMKEQLKGEQQALDAKMASVSNLSLNNGRSDKDKAALESLSQQLKQQAD
DKFSHAMLDFTMSGDSDGSPSVSDSRIFRETRGRSNNEPHIKRPMNAFMVWAKDERRKIL
QAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLV
DGKKLRIGEYKAIMRSRRQEMRQYFSVGQQGQLPLSSAGMVYPGALSMAGMPSPQMPSEH
SSMSSSPEPNANHHQNPHMPGLKGDEPRIKEEELRLDDSNGDVYDDFDYEDEEADYASDN
DNHIPH
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgttgtcgagagagacggacccttactccagcatgctcactgagcctgagcta
cctcaggagtgtaacaggatgtcttccaagcgaccagcctctccatatggggggacagat
ggagaggtaaccatggcaaccagcagacagcgagtggaggacgaggagagcgagggacca
ggcggtgtcatccacctccctctggcctcctattgcggaaaggtgtcccctcactcgccc
cccagccgccacttggatagcccccccagcacagagcacgatggcatcaaggggagctct
ctgagtccttacccacagcacaacgctacctcaccgggcaaagaggagggcggaggcggg
gggagaccctgcagcgacggcggctcggcaaccggcaccctggggacccccgagagacgc
aagggcagcctggcggacgtcgtggacacgctgaagcaacgcaagatggaggagctgatc
aaaaacgagccagaagaggcccccagcattgagaggctgttgtcaaaggactggaaggat
aaacttttggccatgggctcagggcacatcggagaaattaaaggtaccccagacagcctg
gcggagaaagagcgccagctcatgggcatgattggccagttgagcagcctgagggagcag
cttctggcggcgcacgaggagcagaagaagctggccgcctcacaaatggagaagcagagg
cagcagatggagctggccaagcagcagcaggaccagattgcccggcaacagcagcagctc
ctgcagcagcaacacaaaatcaacctcctgcagcaacaaatccagcaggtccagggccag
ctccctccactgatgattcccgtgtttcctcctgaccagcggaccctggcggccgccgcc
gcccagcagggcttcctgatgccccctggcttcaactacaagcctggctgcagtgaccct
taccctctccagctcatccccacaacaatggccgccgccacgcccggcctgggccccctg
cagctacaacagttgtacgccgctcagctggcggccatgcaggtctccccggggacgaag
cagcacggtggcagcctcgcgccgcaagccaacctgggcgctcactccccacccaccaac
tcacatccacagggtgacaagaaccgcagctccccatcttcaaacaaaaacaaggacagt
gagggtgcacagccactgaacctgtcggccaagcctaaggcatccgagagcaagtcaccc
aactcccccccaacttccccacaggttcccgctgccgctgccgccaccaccaagctgggt
cccgccggctccatgaagcacagcgccgtgccctccagcatcggagcgccgtccaccaga
gtcagctcaatagcagacttgttgtcttcgttgtcgtcgacagcctacctgaacgaccac
gaggcggtgagcaaggccttcgcagaggcccggcagatgaaggagcagctgaagggggag
cagcaggccctggacgccaagatggcctccgtcagcaacctcagcctcaacaacggccgc
tccgacaaggacaaagctgccttggagagtttgagtcagcagctgaagcagcaggccgac
gacaagttcagccacgccatgctggacttcaccatgagtggagactccgacggatccccc
agcgtgtccgactccagaatatttcgggaaacgcgtggcaggagcaacaacgagccgcac
attaagcggccgatgaacgccttcatggtttgggccaaggacgagaggcggaagatcctc
caggccttcccagacatgcacaactccaacatcagcaagatcctcggctcgaggtggaaa
gccatgaccaacctggagaagcagccttactacgaggagcaggctcgcctcagcaagcag
cacctggagaaatacccggactacaagtacaagccgcggcccaaacgcacctgcctggtg
gacggcaagaagctgcgcatcggcgagtacaaggccatcatgaggtcccgcaggcaggag
atgagacaatacttcagcgtagggcagcagggccagctgcccttatcctccgcaggcatg
gtctacccaggtgccctttcaatggcagggatgccctccccccagatgccctcagagcac
tcaagtatgtccagcagcccagagcccaacgccaaccaccaccagaacccccacatgccc
ggactgaagggggacgagccacggatcaaggaggaggagctgcggctagacgacagcaac
ggtgacgtgtacgatgattttgactacgaggacgaagaggccgactacgccagcgacaac
gacaaccatatcccccattaa
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