Gambusia affinis (western mosquitofish): 122826431
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Entry
122826431 CDS
T07758
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03013
Nucleocytoplasmic transport
gaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122826431 (upf2)
03015 mRNA surveillance pathway
122826431 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122826431 (upf2)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122826431 (upf2)
mRNA cycle factors
P-body specific factors
122826431 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
122826431
NCBI-ProteinID:
XP_043964195
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All DBs
Position
LG23:complement(18236941..18261474)
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AA seq
1307 aa
AA seq
DB search
MPAESKPSVNMDEKDVSTFTNKEKEKDKEAERRVASARDKAKEEAKASGKKDAGKEEKKK
RLEEEKKKKEEKERRKKEEEKQKAEEDQKKKEEEEKKQQEELQKKLEEDEAKRQREEEAA
LLKEKEEGHQLHQEAWERHQGRKELRSRNQNAQEARPEEAFFSRLDSSLKKNTAFVKKLR
TLTEQQRDALSNDFASLNLSKYIGEAVSSLVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRRVKLAAEKFGLAFPPCEIISTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQTLADL
LDENMPELPQDKSVQEEHGPGIDIFTPGKPGEYELEGGIWEDEDARNFYENLIDLKAFVP
AILFKDNEKSGLSKDKDDTKDGREAKDVSTTEELELELEALDIADEPLELEGGEEVENEE
LAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRR
KLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIET
KNKTVRFIGELSKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETCGRFLFRSPDSHL
RISVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPIEKAVKKKRPPLQEYIRKLLYKD
LSKVTTEKVLRQMRKLPWQEPEAKGYLICCMINIWNIKYNSIHCVANLLAGLVAYQEDVG
IHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVVFRTLFSFISFGVN
PDGSPSPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYIWWKKSVDVW
TKDHPFPIDIDYMISDTLELLRPKMRLSCSLDDATRQVADLEREVLVKLGMAMEKDGRSS
AMSEGEPLDEEDEDEDEEGAADTEEQSGNESELNEQEEDEGSENEEEEREEEEEENTDYL
TDSNKENETDEENNEVTIRGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGEAVKVHQLD
VAIPLQLKSQLKKGGSGQQCMGEGDSDISDTMQFVMLTRKGNKQQYKILNVPLSSHLAAN
HFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSFAQRPAPANTNRERRPRYQHPKG
APNADLIFKTGGSREKRARIEKHEVQGRQRDRDRKAKQQRQQGQAVE
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgagagcaagccctcagtaaacatggatgaaaaagacgtcagcaccttcacc
aacaaagaaaaagagaaggataaagaggctgaacggagggtggcatctgctagagacaag
gctaaagaagaggcgaaagccagcggtaaaaaggatgcaggcaaggaggagaagaaaaag
cgcttagaggaggaaaagaagaagaaagaggaaaaggagcgaaggaagaaagaggaggaa
aagcagaaagcggaggaggatcagaagaagaaagaggaggaggagaagaagcaacaggag
gagctgcagaagaagcttgaagaagatgaggccaaacggcagcgtgaggaagaggcagcg
ctgctcaaggaaaaggaggagggccaccagctgcaccaggaggcctgggaacggcatcag
ggccggaaggagctccgcagccggaaccagaacgcccaggaggcccgacccgaagaggcc
ttcttcagccgcctggactccagcctgaagaagaacacggccttcgtcaagaagctgcgc
acgctgacggagcagcagcgcgacgcgctctccaacgacttcgcctcgctcaacctcagc
aagtacatcggcgaggcggtgagctcgctggtggaggccaagctgaagatctcagacgtg
ggctgcgctgtgcacctgtgctccctgttccaccagcgctacgctgagttcgcaccgctg
ctgctgcaggcctggaagaagcactttgaggccaggaaggaggacaaggcgcccaacgtg
agcaagctccgcaccgacctgcgcttcatcgccgagctcaccatcgtcggcctgttcacc
gacaaggaggggctgtcgctgatctacgagcagctgaagaacatcatcgggacggaccgc
gagacgcacactcacgtgtcggtggtgatcagcttctgcaagcactgtggcgacgacatc
gccggtctggtgccgcgcagggtgaagctggcggcggagaagttcggcctggcgttcccg
ccgtgcgaaatcatcagcaccgagaagcagcagccattccagaacctgctgagggaatac
ttcacctccctgaccaaacacctgaagaaggaccaccgggagctgcagaacatcgagagg
cagaaccggcggatcttgcactccaaaggcgagctgagcgaggatcgccacaagcagtac
gaggagttcgccacgtcttaccagaagctgctggccaacacgcagacgctggctgacctg
ctggacgaaaacatgccggagctgccgcaggacaagtccgtgcaggaagagcacggcccc
ggcatcgacatcttcacccccggaaaacctggagagtacgaactggaaggcggcatctgg
gaggacgaagacgcgcgaaacttctacgaaaacctgatcgacctgaaggcttttgttccc
gccatcctgttcaaggacaacgagaagagcggcctgagcaaagacaaggacgacaccaaa
gatggcagagaagcgaaggacgtgagcaccacagaagagctggagctggagctggaggcg
ctggacatcgcagacgagcctctggagctggagggaggagaagaggtggagaacgaggag
ctggccaagaagctgctggatgagcaagagcaagaagacgaggaggccaacaccgggtcg
cacctgaagttgatcgtggacgccttcattcagcagcttcctaactgtgtcaacagagac
ctgatagacaaggccgccatggacttctgcatgaacatgaacaccaaatccaaccggagg
aagctggtccgggccttgttcaccgtccccaggcagaggttggatcttctgccgttctac
tctcgcctggtggcgacgctgcatccctgcatgtcagacgtagccgaggatctttgctcc
atgctgaagggagacttcaggttccatatccgtaagaaggaccagatcaacatcgagacc
aaaaacaaaacggtgagattcatcggagaactttccaagttcaagatgttctcaaagacc
gacacgcttcactgcctgaagatgctgctgtctgatttcacccaccaccacatcgagatg
gcctgcacgctgctggagacctgcggccgcttcctgttccgctcgcccgactctcacctg
cggatcagcgtcctgctggaacaaatgatgcgtaaaaagcaggcgcagcacctggacgcg
cgctacgtcaccatggtggagaacgcctactactactgcaacccgccgcccatcgagaag
gccgtgaagaagaagcggccgccgctgcaggagtacatcaggaagctgctgtacaaggac
ctgtccaaggtcaccacggagaaggtgctgcggcagatgcgcaagctgccgtggcaggag
cccgaggcgaagggctacctgatctgctgcatgatcaacatctggaacatcaagtacaac
agcatccactgcgtggccaacctgctggccggcctggtggcgtaccaggaggacgtgggc
atccacgtggtggacggcgtcctggaggacatccggctgggcatggaggtcaaccagccc
aagttcaaccagcggcggatcagcagcgccaagttcctgggtgagctctacaactaccgc
atggtggagtcggccgttgtcttccggacgctcttctccttcatctccttcggggtgaac
ccggacggcagccccagtccgctggacccgcccgagcacctgttccgcatccggctcgtc
tgcacgctgctcgacacctgcggccagtacttcgaccgcggctccagcaagaagaagctc
gactgtttcctcatctacttccagcggtacatttggtggaagaagagcgtggatgtttgg
acgaaggaccacccgttccccatcgacatcgactacatgatcagcgacacgctggagctg
ctgcggcccaagatgcggctcagctgctcgctggacgacgccaccaggcaggtggccgac
ctggagagggaagttctcgtcaaactgggcatggccatggagaaggacggccgctccagc
gccatgagtgaaggcgagccgctcgatgaggaagacgaggatgaggacgaagagggagct
gctgacaccgaggagcagtctggcaacgagagcgagttgaacgaacaggaagaggatgaa
ggatctgagaacgaggaagaggagcgtgaggaagaggaggaggagaacacagattacctg
accgactccaacaaggagaacgagacggacgaggagaacaatgaagtgacgatccgcggc
ggaggactgaagcacgtcccctgcgctgaggatgaagacttcatccaggctctggataag
atgatgctggagaacctgcagcagcgcagcggcgaggcggtgaaggttcaccagctggac
gtggccatcccgctgcagctgaagagccagctgaagaagggcggatccggccagcagtgc
atgggagagggcgactcggacatctccgacaccatgcagttcgtcatgctcactcgcaaa
ggaaacaagcagcagtataagatcctgaacgtccccttgtcgtctcacctggcggcgaat
cacttcaaccagcagcaggcggagcaggaggagaggatgaggatgaagaaactcaccctg
gacatcaacgagaggcaggagcaggaagactaccaggagatgatgcagtcgttcgcccag
cgtccggctccggccaacaccaaccgggagcgccggccgcgctaccagcacccgaaaggc
gctcccaacgccgacctcatcttcaaaaccggaggaagcagagagaaaagggcgagaatt
gaaaagcatgaggtccaaggcaggcagagggacagagacaggaaagccaagcagcagaga
cagcagggacaagctgtggaataa
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integrated database retrieval system
