Gambusia affinis (western mosquitofish): 122826512
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Entry
122826512 CDS
T07758
Symbol
polb
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122826512 (polb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122826512 (polb)
Enzymes [BR:
gaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
122826512 (polb)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
122826512 (polb)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
122826512 (polb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
HHH_8
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_5
HHH_2
NTP_transf_2
Cdd1
DUF4806
Motif
Other DBs
NCBI-GeneID:
122826512
NCBI-ProteinID:
XP_043964414
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All DBs
Position
LG03:16618697..16623983
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AA seq
337 aa
AA seq
DB search
MSKRKAPQESLNEGITDFLVELANYEKNVNRAIHKYNAYRKAASTIAKYPNKIKSGEEAK
KLDGVGAKIAEKIDEFLQTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFVEEGVK
TLDDLKKVEHKLNHHQKIGLKYFEEFEKRIPRAEMEKMEVLILGELKKIDPEYIGTICGS
YRRGAASSGDIDILLTHPNYTSQTEKQPKLLHAVVDHLESIGFVTDTLSKGDTKFMGVCQ
LQDTDDDDEEEHLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTI
RPLGVTGMAGEPLLVDSERDIFEYIQYRYREPKDRSE
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaggaaagctccacaggagtccctaaatgagggaataactgactttcttgtc
gaactggctaactacgagaaaaatgtcaacagggcaatacataaatacaatgcatacagg
aaagcagcatccaccattgccaagtatcctaacaagattaaaagtggagaagaggcaaag
aaactggatggagttggtgctaaaatagctgaaaagattgatgagttcttgcaaactgga
aaactaagaaaacttgaaaagatcagaaatgatgacacaagctcttccataaatttcctc
accagagtcactggaatcgggcctgctgctgctaggaagtttgttgaagagggggtgaag
acattggatgatttgaaaaaggtagagcacaagctaaatcaccaccagaagattggactc
aagtactttgaagaatttgagaaaaggatcccaagagctgaaatggaaaagatggaggtc
cttattctgggggaattaaagaaaattgatccagaatatatcggaacaatctgtggaagc
tacaggagaggtgcagcatcaagtggtgatattgacattttactgactcacccaaattac
acttctcaaacagagaagcagccaaagcttcttcatgctgtggtcgatcacttggagtcc
attgggtttgtgaccgacactctgtccaaaggagacaccaagttcatgggagtctgccag
ctgcaggacactgatgatgacgacgaggaagaacatcttcacaggcgcattgatattagg
ttaattcccaaggaccagtactactgtggagttctgtatttcactggaagtgacatcttt
aataagaacatgaggactcacgctctggaaaagggcttcactctgaacgagtacaccatc
aggccactaggtgtcactggaatggcgggagagcctctgttggtggacagtgagagagac
atctttgaatacatccagtacagatacagagagccgaaggatcgcagcgagtga
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