Gambusia affinis (western mosquitofish): 122826539
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Entry
122826539 CDS
T07758
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gaf04121
]
122826539 (pdzrn4)
Enzymes [BR:
gaf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122826539 (pdzrn4)
Ubiquitin system [BR:
gaf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
122826539 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
122826539
NCBI-ProteinID:
XP_043964466
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All DBs
Position
LG23:complement(8709298..8772645)
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AA seq
817 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGRDFSKVEHDESVAIRRDPIVVQVLRRTPARATAV
QKNCDSAQDVCVVDVCTQTDITFEHIMALAKLRPATPPVPDICPFLLSDSCQSIHTMEHD
FYECPEFMSNTPGDVERPEEYEYEEVELCRLNREDKLGLTLCYRTDDEEDTGIYVSQVEP
NSIAARDGRIKEGDRILQINGFEVQDREKAVALLSSEEAKSIRLLVTRPEIQLEEEAVWL
DDEQQRLVEELKMEILAEKRKQREQSFEMADRLQGDEDVTTDTATCSSNNQDSGFGRSTD
STEHQPLLARLYKRSPAQCLRDRWQSEHPLNRRGTVVPQDVQSTKSHSASQGNESVVSIR
NSGCGVRGLENCFQQLLELKCQIRNGGECGVYSIRHSIECSLTGQGGGDGDSDGDVGAGG
GVEQELKMLNEELRSIELECQSIMQAHQLRKSQQLEQSQSAPCSPGVNHKNGQKRHGRLA
DIHEYPERSDSDRVREKDSSSAYNTAESSRSTPLGMERSPDHSLQRQISITNQKNLRLAS
SAPSNPIPIPKPQGTRRPCRPADHGPVISSSPDQSNPSRSESDPSLPADDERCDKKGRSR
DSRRALPYGASYQTGTYHGQGGSKQLQSYMQLLQQHSSLEYSQSQLSLLSVCRDPMHRNG
RGGEPRLEWKVKVRADGTRYVARRPARDRILRERALRIREERSGGMTTDDDAMSEMKMGR
YWSKEERKQHLARAREQRKRREFMQKSRLECLKEGPASGAESKKEINILELSHKKMMKKR
NKKILDNWMTIQELMSHGARVPEGSTVHNAFLSVTTV
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatttgtgcaccttgcagaaacgagaggaacactacaaactgctctacgag
attgcacaggtgaacgggcgtgacttctccaaggttgaacatgacgaatcagtggccatc
aggcgagaccccatcgtcgtccaggttctccggcgaacccccgccagagccaccgctgtg
cagaagaactgcgactcagcacaggatgtgtgtgtggtcgacgtttgcacacaaacagac
atcacattcgagcacatcatggctctggccaagctgcggcccgcaaccccgccagtccca
gacatctgtccgttcttgctctccgacagctgtcagtccatacacaccatggaacacgac
ttttatgaatgtccagagttcatgtccaatactccaggagacgtggaaaggcctgaagag
tacgagtacgaggaagtggagctgtgtcggctgaacagagaggataagctcggtctgaca
ttatgctaccggaccgacgatgaggaggacaccggcatttacgtcagtcaggtggagcca
aacagcatagcagcgagagacggacgcattaaggaaggagaccgcattctgcagataaat
ggctttgaagtgcaagaccgggagaaagctgttgccttgttgtcaagcgaagaagcaaag
agcatcagactcctggtgacaaggccagagatccagctggaagaggaggctgtgtggctg
gatgacgagcaacagcggcttgtcgaggagctgaagatggagattctggcagagaagagg
aagcagagagaacagagctttgagatggcagacaggcttcaaggcgatgaggacgtcaca
acagacacggccacctgctcttccaacaatcaagacagtggatttgggcgcagcacagac
agtaccgagcaccagcccttattggcaagactttacaagaggagccccgcacagtgcctg
agggatcgatggcagtcagaacatccactcaacaggcgagggactgttgtaccacaagac
gtccaaagcacaaaatcccattcagcgagccaaggcaacgaaagtgtagtgagtattcgt
aatagtggatgcggagtccgaggtttagagaactgcttccagcaacttttagagctcaag
tgccaaatacgaaatgggggcgaatgtggggtgtactccattagacacagtatagaatgt
agtctcactgggcaaggtggaggggatggagatagtgacggtgatgttggtgcaggggga
ggggtagagcaggagttgaagatgctgaatgaagagctgcgcagcattgagttggagtgc
cagagcatcatgcaagcccatcaactacgcaagtcccagcagctcgagcaatcacagtct
gcaccctgctcaccaggagtgaaccacaaaaatggacaaaagcggcacgggaggctggct
gacattcatgagtaccccgagaggtccgacagtgatagagttcgtgaaaaggacagctcc
agtgcctacaacacagcggagagttcccggtcaacgcctcttggcatggagagatcccct
gatcattcgctgcagagacagatcagcattaccaaccagaaaaacctcagacttgcctct
tctgcaccatccaatcccattcctatccccaagcctcaaggcacacgtaggccttgcagg
ccagccgatcacggtccagttatctccagcagccccgaccagagcaatccttcacggtct
gagtcggacccatcactaccagcggacgatgaaagatgcgacaaaaagggaaggagcaga
gactcgagaagagctcttccttatggtgcttcatatcagacgggcacctatcacggccag
ggaggatccaaacaacttcagagctatatgcagctgctccagcagcactcgtccctggag
tattcacagagccagctgagtctccttagcgtgtgtcgagatcccatgcatcgcaacggt
cgtgggggggagcctcgcctggagtggaaagtcaaagtccgcgcagatgggacacgctac
gtcgccaggagacctgctcgcgaccgcattcttagggagcgggcacttagaatcagagaa
gagaggagcggaggcatgaccacagatgacgatgcgatgagtgagatgaagatgggccgc
tactggagcaaagaggagaggaagcagcatttggcaagagccagggagcaaaggaagagg
agggagttcatgcagaaaagccgcctcgaatgcctaaaggagggaccagcaagcggagcc
gagagcaagaaggagatcaacatcttggagctcagtcacaaaaagatgatgaagaagcgg
aacaaaaagattctggacaattggatgaccatccaagaactgatgagccacggggcaagg
gtcccagaggggtctactgttcataatgcctttctttctgtcaccactgtgtaa
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integrated database retrieval system
