Gambusia affinis (western mosquitofish): 122826777
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Entry
122826777 CDS
T07758
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gaf03016
]
122826777 (rtcb)
Enzymes [BR:
gaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
122826777 (rtcb)
Transfer RNA biogenesis [BR:
gaf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122826777 (rtcb)
Prokaryotic type
tRNA splicing ligases
122826777 (rtcb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
122826777
NCBI-ProteinID:
XP_043964999
LinkDB
All DBs
Position
LG23:19389731..19393999
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKTGSTSWRIKKGFVPNMQVEGVFYVNDSLEKLIFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPNAVVSPGGVGFDI
NCGVRLLRTNLDERDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMA
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagctacaacgatgagctgcagtttctggagaaaacgggcagcacgagctgg
aggatcaaaaagggctttgttcccaacatgcaggttgaaggagtcttctatgtgaacgat
tccctggagaagctgatatttgaggagctccggaacgcctgcagaggaggaggtgtcgga
gggtttctgccggccatgaagcaaatcgggaatgttgcagctctgcctggaattgttcat
aggtccattggactcccagatgtccactctggatacggattcgccatcggcaacatggct
gccttcgacatgaatgatccaaacgcagtagtatctccaggtggcgtcggctttgacatt
aactgtggcgtccgtctcctgaggaccaacctggacgagcgggacgtccagccggtgaag
gagcagctggcccagtccctgtttgaccacatcccggtcggagtcggctccaaaggagtc
atcccaatgggagccaaggatctggaagaggctctggagatgggggtggactggtccctg
agggagggctacgcctgggccgaggacaaggagcattgcgaggaatacggccggatgcta
caggccgaccccaacaaggtgtcgtccaaggccaagaagagaggcctgccacagctggga
acgcttggggccggaaaccactacgccgagatccaggtggtcgacgagatctacaacgag
tatgctgccaagaagatgggcatcgaccacaagggccaggtgtgcgtgatgatccacagc
ggcagccgcggcctcggacatcaggtcgccacagatgctctggttgccatggagaaggcc
atgaagcgggataagatcacagtgaacgaccggcagctggcctgcgctcgcatcacctcc
caggagggccaggactacctgaagggaatggctgctgcagggaactatgcctgggtcaac
cgctcctccatgaccttcctcacccgacaggccttctccaaagtgttcggcactacgcca
gacgacctggacatgcacgtcatctacgacgtctcccacaacattgccaaggtggaagag
cacatggtagacgggaagcagaggacgctgctggttcaccggaagggatccacccgtgcc
ttccctcctcatcatcctctgatcccggtggactaccagctcacaggtcagccggtgctc
atcggagggactatgggaacctgcagctacgtcctgacaggaaccgaacaaggaatggcg
gaaacgttcggcactacgtgtcacggagcgggccgcgccctctctcgagcaaagtcccgc
aggaatctggacttccaggacgtcctggacaaactggccgatatgggcatcgccatccga
gtggcgtctcccaaactggtgatggaggaggctccagagtcctacaagaacgtgacggac
gtggtgaacacgtgtcatgacgcaggaatcagcaagaaggccatcaaactgaggcccatc
gctgtgatcaaaggctga
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