Gambusia affinis (western mosquitofish): 122826901
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Entry
122826901 CDS
T07758
Symbol
ddx3xb
Name
(RefSeq) DEAD-box helicase 3 X-linked b isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
122826901 (ddx3xb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122826901 (ddx3xb)
03041 Spliceosome [BR:
gaf03041
]
122826901 (ddx3xb)
03036 Chromosome and associated proteins [BR:
gaf03036
]
122826901 (ddx3xb)
Enzymes [BR:
gaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122826901 (ddx3xb)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122826901 (ddx3xb)
mRNA cycle factors
Common to processing body (P body) and stress granule
122826901 (ddx3xb)
Spliceosome [BR:
gaf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122826901 (ddx3xb)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122826901 (ddx3xb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-GeneID:
122826901
NCBI-ProteinID:
XP_043965198
LinkDB
All DBs
Position
LG24:9027718..9038631
Genome browser
AA seq
736 aa
AA seq
DB search
MSHVAVENAHGLEQQLAVLDLSAPDGQGGGRYVPPHLRNKDASKNVGNAFAAGRPGGYTI
APAANYGWDAGRNNFVNGYHDNRMSGNSFNRGPPRMERGRGGVAGGGYRGNRGGAFNPIN
PINPINPAQPISFDAGGWNTAKDAYSSFGNNRGKSAFFNDRGNASRGRFDHGGFGGGGGG
NSRWVEESRDDGDWSKPLPRNERLEHELFSGSNTGINFEKYDDIPVEATGQNSPHHIESF
QDVDMGEIVMGNIALSRYTRPTPVQKYAIPIVKSKRDLMACAQTGSGKTAAFLLPILSQI
FTDGPGEALNAAKASGQENGKYGRRKQYPIALVLAPTRELALQIYEEARKFSYRSRVRPC
VVYGGADIGQQIRELERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFE
PQIRRIVEQDTMPHKGIRQTLMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQK
VVWVEESDKRSFLLDLLSATVIPNEVQDNTGDNVEKPGKDSLTLVFVETKKGADALEDFL
YREGYACTSIHGDRSQRDREEALNQFRSGKCPILVATAVAARGLDISNVKHVINFDLPSD
IEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQHK
SSNRGRSKRFSGGFGARDYRQTAAGGNAGGFGGRGGRNQQGHGGNRGFGGGGFGNFYTSD
GYGGNYSHSQVDWWGN
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatgcccacggtctagagcagcagctggctgtcctggac
ttgagtgctccagatggacaaggcggagggcgatatgttcctccgcatttacggaacaaa
gacgcatccaagaacgtgggaaacgcttttgctgcaggacgaccgggcgggtacaccata
gctcctgcagcaaattacggttgggacgcagggcgcaacaactttgtcaacggctaccat
gacaaccgcatgagcgggaactcgttcaaccgtggcccgccacgcatggagcgtgggcga
ggcggtgttgcgggaggcggttaccgtggcaacaggggcggagcgttcaaccccattaac
cccattaaccccattaaccccgcgcagcccataagcttcgatgccggtggctggaacacg
gccaaagacgcctatagcagctttggcaacaaccgaggaaagtctgcgttcttcaacgac
agaggcaacgccagcagaggaaggttcgatcacggtggattcggtggtggcggaggagga
aacagccgctgggtggaggagtccagggacgatggcgactggtccaagccgctgccgcgt
aacgaacgcctggaacatgagctgttctccggcagcaacactgggatcaacttcgagaaa
tacgacgacattcccgttgaggctacaggacaaaactcccctcatcacatcgagagtttc
caagatgtcgacatgggtgagattgtcatgggcaacattgctctgagccgctacaccaga
ccaactcctgtgcagaaatacgccattcctatcgtgaaatccaagagagacctcatggcc
tgcgcacagacgggatctggaaagacggccgcgttcctgctgccaattctcagccagatc
ttcacagacggaccaggagaagctctgaatgcagccaaagcctcaggacaggaaaatggg
aagtatggccggcgtaagcagtaccccatcgccctggtactggccccaaccagagaactg
gcgctgcagatctacgaagaagccaggaagttttcgtaccgctccagagtgcgtccctgt
gtggtgtacggcggggcagacattggccagcagatcagagaactggagagaggctgccac
ctgctggtagcaactcctggcagactggtggacatgatggagagaggcaagattggactg
gactactgcaactacttggtgctagatgaggcagaccgcatgctggacatgggctttgaa
ccacagataagacgcatcgtggagcaggacaccatgccgcacaaaggcatcagacaaacc
ttgatgttcagcgctacgtttcctaaagagatccagatcctggcgagggatttcctggag
gattacatcttcctggcagtgggcagagtgggttccacctcggagaacatcacacagaag
gtggtgtgggttgaagagagtgataagagatctttccttttggatctgctcagtgctaca
gtcatccccaacgaggtacaggacaatactggagacaacgtagagaaacctgggaaggac
tccctgaccctcgtcttcgtggagaccaagaaaggagccgacgccttggaggacttcctg
taccgggagggctacgcttgcaccagtatccatggcgaccgctcccagagagaccgcgag
gaggcactgaaccagttcagatcgggaaagtgccccattcttgtcgccacggcggtcgca
gctcgaggtctggacatctccaacgtgaaacatgttatcaacttcgaccttccaagcgac
atagaggagtacgtccatcgcatcggacgtacggggcgagtcggaaacctgggactggcc
acgtcattcttcaacgacaaaaatgggaacatcacaaaggacctgctggatatcctggta
gaggctaaacaggaggttccctcatggctggagagcctggcctatgaacaccagcacaag
agtagcaacagggggcgctctaagaggttctctggtggtttcggagctcgggattaccgc
cagacggctgccgggggcaacgccggagggttcggggggcggggtggacgcaaccagcag
ggacacggaggaaaccgtggcttcggaggaggtggttttggcaacttctacacaagcgac
ggctacggaggaaattactcccactctcaagtggattggtggggaaactag
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