Gambusia affinis (western mosquitofish): 122827047
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Entry
122827047 CDS
T07758
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03030
DNA replication
gaf03410
Base excision repair
gaf03420
Nucleotide excision repair
gaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122827047 (rfc5)
03410 Base excision repair
122827047 (rfc5)
03420 Nucleotide excision repair
122827047 (rfc5)
03430 Mismatch repair
122827047 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gaf03032
]
122827047 (rfc5)
03036 Chromosome and associated proteins [BR:
gaf03036
]
122827047 (rfc5)
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122827047 (rfc5)
DNA replication proteins [BR:
gaf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122827047 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
122827047 (rfc5)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
122827047 (rfc5)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122827047 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
122827047 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
AAA_24
RuvB_N
AAA_14
DEAD
AAA_16
ResIII
DUF815
PhoH
AAA_7
AAA_assoc_2
TIP49
ATPase_2
AAA_5
AAA_30
AAA_19
AAA_2
nSTAND3
Mg_chelatase
Thioredoxin_6
AAA_25
DUF4119
Motif
Other DBs
NCBI-GeneID:
122827047
NCBI-ProteinID:
XP_043965522
LinkDB
All DBs
Position
LG03:complement(28461896..28466945)
Genome browser
AA seq
335 aa
AA seq
DB search
MALTSKGQLQTRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDKLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMMPRL
EHVIQMENIDATPDGKKAIVTLSTGDMRRSLNILQSTSMAYGKVTEHTVYTCTGHPLRSD
IANILDWCLNKDFTSAYKQVLELKTLKGLALHDILSEVHLLVHRVDFPPAIRMGLLIKLA
DIEYRLAAGTNEKIQLSSMVAAFQAVRDMVVSEAS
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaacaagcaaagggcaattacagaccagaaacctgccatgggttgaaaaatac
agacctcagacactggatgatttaatttcacacaaagacattctgagcaccatccagaag
ttcatcagcgaggacaagcttccccacctgttgttctacggccctcctggaacaggaaag
acctccaccatcctcgcctgcgcaaggcagctctacaaggacaaagagtttaactccatg
gtgttggagctaaatgcatcagacgacagagggattgatgtagtccgaggtcctattctg
agttttgccagcaccaggactattttcaaaaagggcttcaagttggtgatactggatgag
gccgatgccatgacccaggatgcccagaatgcattgcgacgagtcattgagaagttcaca
gaaaacactcgattctgcctgatctgcaactacctgtccaagatcatcccagccctgcag
tctcgctgcaccaggttccgctttggcccgctgtctccggaccagatgatgcctcgactg
gagcacgttatccagatggaaaacattgacgccactccagatggaaagaaggccatagtc
actctatcaacaggtgatatgagaagatcactcaacatcctgcagagcaccagcatggcg
tatgggaaggtcacagagcacactgtctacacctgcaccggtcatcctctccgctctgac
atagccaacattctcgactggtgcctcaacaaagacttcacttcagcttacaaacaggtt
cttgagctgaagactttgaagggtttggctctgcatgatattctgtctgaggtgcatctg
cttgtccacagagtggactttcctccagccatacggatgggacttcttatcaaattagcc
gacatagaatatcggctggcggcaggaaccaatgaaaagatccagctgagctccatggtt
gcagccttccaggccgtcagagacatggtggtcagtgaagcctcttaa
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