Gambusia affinis (western mosquitofish): 122827234
Help
Entry
122827234 CDS
T07758
Symbol
trim25l
Name
(RefSeq) tripartite motif-containing protein 16 isoform X1
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
122827234 (trim25l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gaf04121
]
122827234 (trim25l)
Enzymes [BR:
gaf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122827234 (trim25l)
Ubiquitin system [BR:
gaf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
122827234 (trim25l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
SPRY
zf-C3HC4
zf-RING_UBOX
zf-B_box
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
ANCHR-like_BBOX
RING_XB3-XBAT31
zf-RING_5
DUF948
DUF2150
Motif
Other DBs
NCBI-GeneID:
122827234
NCBI-ProteinID:
XP_043965882
LinkDB
All DBs
Position
LG24:4442866..4449373
Genome browser
AA seq
793 aa
AA seq
DB search
MSGKLWTEEQFNCPVCLDLPNDPVTIPCGHSYCMACIKDFWTKDDPKGIYSCPQCRQTFC
PKPPLSRNTMLAEAVEQLRKGALQSDVRDSIRSARGLSSRSKSKLSTGDVQCDMCKGEQR
AAVKSCLACMSSFCETHLKPHQTKKSLKQHELIPPTSNLAEKICTQHKYLQEFFCRQCKM
FVCWLCTSNQHKDHECVSTKAERQEREKLLSDIQADNQLKLKHREQELKDMKKMMEGVKR
SAEKVHNETENILGELLRSVEHLQELLEEVLDQAGLEKMNQAQEVADNLEAEIRERRKRD
TEMKDLADCGDNIYYLQTCDTMSSPLDCGDLPAVQVNHNATFEPVLEVVLALRDRVEDLC
NQELGKINKQVNETKLFTLGNSSRLGGKKVFRDLFSGLSKSNNRTPALSISLDVRSTDRQ
GRAAIRGPDVRSRDAPRDRGNTNSPRRRRDEREAELESNPSPTPSRRGGPSLWSRSSQNP
VAPPAAMTPTPIPASPSPSPTPAPAPATSSAFSRMASISSLFRSHRRGANQATPVNNTTA
AGGNPGGMVDLLETPTEINPGLFLDTPLPNAMTQAPAFPALREINLDSIQAPEPRSREEF
LQYSVILTLDPNTAHRRLVLSDGNTKATLQGPTQPYADTPQRFDGWTQVMCQSPLQAQRS
YWEVEWRGRGSSVGVAYASLSRKGNDARSGLGYNPQSWTLELSDTCCSAMHANEKRDIPV
TYSPRLGIFADLSAGTLAFYSVADNMTHLHSFRANFTQPIYATFGVGSGVGVGLDFALGQ
FSSSCDSIKICPL
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggaagctgtggacggaggagcagttcaactgccccgtgtgtcttgatctcccc
aatgatccggtcaccataccctgcggacacagctactgcatggcctgcatcaaagacttc
tggaccaaggatgaccccaaagggatttacagctgcccccagtgccgccagaccttctgc
cctaagccgcccttgtccagaaacaccatgctggccgaggctgtggagcagctccgcaaa
ggggccctccaatcagacgttcgagactccatccgaagcgctcgcgggttgtcctctaga
tccaagtccaagctgtccaccggcgacgttcagtgcgacatgtgcaaaggggagcagcgt
gccgccgtgaaaagctgcctggcgtgcatgagctccttctgcgagacccacctgaagcct
caccagaccaagaagtctctcaagcagcatgagctcataccgccgaccagcaatctggcg
gagaagatctgcacccagcacaagtacctgcaggagttcttctgtcgccagtgcaagatg
tttgtctgctggctgtgcaccagcaatcagcacaaagaccatgagtgtgtgtccaccaag
gctgagcgacaggagagagagaagctgctttcagacatccaagcagacaaccagctgaag
ctgaaacacagggagcaggagctgaaggatatgaagaagatgatggaaggagtgaagcgt
tctgcggaaaaggtgcacaatgagacggagaacattctgggcgagctgctgcgctccgtg
gagcatctgcaggagctgctggaggaggtgctggaccaggccggcctggagaagatgaac
caggcccaggaggtcgctgacaacctggaggccgagatcagggaacggaggaagagggac
acggaaatgaaggacctggcggactgtggagacaacatctactacctccagacgtgcgac
accatgagcagtcctcttgactgcggcgacctgccggccgtgcaagtcaatcacaatgcg
acctttgaacccgttctagaagtagtgctggccctcagggaccgagtggaggatctgtgc
aatcaggagctggggaagatcaacaagcaagtcaatgaaaccaaactgttcactttggga
aactccagtcggttgggagggaaaaaagtatttcgtgatttgttttctggtctgagtaaa
agcaacaaccgtaccccagctttaagcatttccctggatgtccgaagtacagaccgacaa
ggacgagcagcaatcagaggtccagacgtgaggagccgggatgcacctcgggacagagga
aacacaaactcgcccagacggagacgagacgagagagaggctgagcttgagtctaacccc
agccccacccccagccgcagagggggcccgtctctctggagcaggtctagtcaaaacccg
gtcgcccctcctgcagctatgactccgactccaatcccagcttctccttctccttctcct
actccagctccagctccagctacatccagtgcattcagcaggatggcgtcgatcagcagc
ctgtttcgctcacaccgacgaggcgccaaccaggccaccccggtcaataacaccacagct
gcaggaggaaacccgggcgggatggtggatctgttagaaacaccaacagagattaaccca
gggctgttcttggacacgcctctgccgaacgccatgacccaggctccagcttttcctgca
ttgagagaaatcaaccttgacagcatccaggcaccagaaccgagatccagagaggagttt
ctccagtattctgtgatcctgacccttgaccccaacacagctcacaggcgcttggtactc
tccgacggaaacaccaaggctaccctgcagggtccgacgcagccgtacgccgacacaccc
cagcgcttcgacggctggacccaggtgatgtgccagagcccgctgcaggcccagcgctcc
tactgggaggtggagtggaggggccgtggctcatcagtgggcgtggcctacgcctcactg
agcaggaagggcaacgacgcccggtccggcctcggctacaatccccagtcctggacgctg
gagctgtccgacacctgctgctcggcgatgcacgccaacgagaagagggacatccccgtc
acctactcgccccgcctgggcatcttcgccgatctgtcggcggggacgctggcgttctac
agcgtggcggacaacatgacgcacctccacagcttcagggctaacttcacccagcctatt
tatgcgacgttcggagtggggagcggggtcggggtgggtctggacttcgccctggggcag
ttctcatccagctgtgacagcattaagatctgtccgctgtga
DBGET
integrated database retrieval system
