Gambusia affinis (western mosquitofish): 122827754
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Entry
122827754 CDS
T07758
Symbol
pdlim5a
Name
(RefSeq) PDZ and LIM domain protein 5a
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122827754 (pdlim5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
gaf04990
]
122827754 (pdlim5a)
Domain-containing proteins not elsewhere classified [BR:
gaf04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
122827754 (pdlim5a)
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Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
Motif
Other DBs
NCBI-GeneID:
122827754
NCBI-ProteinID:
XP_043966645
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Position
LG03:21678471..21730794
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AA seq
553 aa
AA seq
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MSGNYSVTLLGPAPWGFRLQGGKDFNMPLTISRLTDGGKAAKGGVAVGDTVLSIDGVSTE
GMNHLEAQNKIKNCTGNLSLTLQKSSVSKPPPVAPKDNRTDLIKPVAITHPSVSQHPQSQ
GSASYHKVPRPYGGCSSEGVYSPSQSPFTTFIPSPSSAFTPASSLIGPPPSPLLPPLISY
PSSASSSSSPPVLVAPQPSVYNTPINLYSAENACEVAMGQRRGLLESQGGALPHFNGITR
KHIRKRIMEDTEDWRPRTGTTQSRSFRILAQITGTENVQTEEADASKKTNEEDEETQLNS
HESAVVKTMMKGTASNHGQGVQSGLITPSFGMKGNGSASVLRGPVPARPVPQPHPKDEDS
LVQMAEHIPAGMRTPMCAHCNMVIRGPFLVAMGKSWHKEEFNCAHCRTSLADIGFVEETG
SVYCEHCYEEFFAPTCSRCQAKILGEVINALKQTWHVYCFMCAACQQPIRNNTFHLEDGE
PYCEQDFYSLFGTGCHGCEFPIEAGDKFLEALGYNWHDTCFVCVVCCASLEGQTFFSKKD
KPLCKKHAHTVKI
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggaactacagcgtcactctgttggggccggccccttggggtttcaggctacaa
ggagggaaggactttaacatgcccctcaccatctccaggctgacggatggtgggaaagca
gctaaaggtggtgttgcagtcggagacacggttctctccatcgacggtgtttccacagag
ggcatgaaccaccttgaggcccaaaacaaaatcaagaactgcaccgggaaccttagtctc
actttgcagaaatccagtgtttctaagccccctccagtggcaccaaaggacaaccgaaca
gacctcataaaaccagtagccatcacccatccctctgtttcacaacatccacagtctcag
ggctctgcttcttaccacaaggtccccagaccttatgggggttgcagctctgagggtgtg
tactctccttcacagtcacctttcaccaccttcatcccttccccatcctctgccttcact
cctgcttcatccctcattggtcctcctccttcccctcttcttcctcctttgatctcttac
ccgtcctctgcatcctcttcctcctccccccctgtcctggttgcgcctcagccatcagtg
tataacacaccgatcaacctctactctgctgaaaatgcgtgtgaggtggccatggggcaa
aggcggggcctgttggagagtcagggaggagccttaccacattttaatggtattactagg
aaacatattagaaagcgcattatggaggacacagaggactggcgcccacgcacgggcacc
acccagtcccgatctttcaggattctggctcagataacaggcacagagaatgttcaaact
gaagaagctgatgcatcaaagaagacaaatgaggaggatgaggagacacagcttaactcc
catgaatctgctgttgtcaaaactatgatgaaaggaactgcttcaaaccatggccaagga
gtacagagtggtttgatcactccatcctttggaatgaagggtaatgggagtgccagtgtc
ctcaggggtcctgttccagcccgaccagtgcctcaaccccaccccaaagatgaggactct
ctggtccagatggcagaacacattcctgctgggatgcgaacccccatgtgtgcccactgc
aacatggtgatcagaggaccatttttggttgcaatgggaaaatcatggcacaaggaggaa
tttaactgtgcccactgccgaacatctctggcagacataggctttgtggaagaaacaggc
tctgtgtattgtgaacactgctatgaagagttctttgcgccaacctgcagccgctgccag
gccaagatattgggggaggtaattaatgccctgaaacaaacatggcatgtctattgcttc
atgtgtgctgcctgtcagcagccaatcaggaacaacacctttcacctggaggatggagaa
ccttattgtgagcaagacttttacagtttgtttgggactggttgccatggctgtgagttc
cctattgaggctggagacaaatttctggaggcactcggttacaactggcacgacacttgc
tttgtttgtgtcgtatgttgtgcctctctggagggtcagacctttttctccaaaaaggac
aaacctctttgcaagaaacatgctcacacagtgaagatatga
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