Gambusia affinis (western mosquitofish): 122828040
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Entry
122828040 CDS
T07758
Symbol
cacna1ba
Name
(RefSeq) calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04010
MAPK signaling pathway
gaf04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
122828040 (cacna1ba)
04020 Calcium signaling pathway
122828040 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gaf04040
]
122828040 (cacna1ba)
Ion channels [BR:
gaf04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
122828040 (cacna1ba)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
122828040
NCBI-ProteinID:
XP_043967155
LinkDB
All DBs
Position
LG03:complement(1667476..1756363)
Genome browser
AA seq
2311 aa
AA seq
DB search
MARFEDDASSRFRGSGPPGPARGANRQPGPPGGQRMYKQTMAQRARTMAIYNPIPVKQNC
LTVNRSLFIFSEDNIIRKYAKKITEWPPFEYMILATIIANCIVLALEQHLPALDKTPLSE
RLDDTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILATVGADFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGMLLFFAILMFAIIGLDFYIGK
FHRTCFKNGTKEQVADFPCGPEPPARTCGKGNICEEYWLGPNFGITNFDNILFAILTVFQ
CITMEGWVDILYNANDASGNMWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEKR
QEFLKLRRQQQIERELTGYLEWICKAEEVMLAEEDKNAEEKSLDGAWYKRKHNPNSVLKR
TKKSKNDLINAEEGEDHFTDISSVGPPGSPFARASVKSKNESSSYLRRKEKRIRFTIRHL
VKSQTFYWTVLCLVGLNTLCVAIVHYDQPEWLTYALYLAEFVFLGLFLAEMTIKMYGLGP
QTYFHSSFNCFDFGVIIGSIFEVVWAAIKPGASFGISVLRALRLLRIFKVTKYWNSLRNL
VVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDTFPAAILTVFQ
ILTGEDWNAVMYHGIESQGGVHGGMFSSIYFIILTLFGNYTLLNVFLAIAVDNLANAQEL
TKDEEEQEEAISKKLALQKAKEVQEVSPMLAANISITTSYVCTPVHHYLSNEQQRSVKMM
SVWEQKASQLRRHNQASCEVLYDPEECVCLPSGLQMRPDMKTHLDRPLVVGHSDGLLMRG
HQHHRHQPGTPEETETAADPPSAPPHSNHRHHRHRDRGRAKVKEEPNDSGGDSGKDGRQH
VHHSHSKNHDYSCRQEGKSGRSSSKDRSRKHHHHSSMDESAGVGATREREHRHHHSHRQS
RGGNGAVNGGGRGEHRLHRKDGRSSNKDGDREGKRRRHRTHGSRSQSRAEVEETNERDEP
NTNRFGESDDISQQPGSLETSGQPEDSDNQKNVRRTGQTSIRIPPVTITTPGEITMIQMN
STDNESMPMNEKNLKDQCHSGPRPILAYSSMFIFGQTNPVRRLCHYIVTLRYFEMSILVV
IAMSSIALAAEDPVWTNAPRNNVLKYLDYAFTGVFTFEMVIKMVDLGLLLHPGSYFRDLW
NILDFIVVSGALVAFAFSGTKGKDISTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSL
KNVLNILIVYILFMFIFAVIAVQLFKGKFFYCTDESKALEKDCKGQFLDYDKETVAAMPR
EWKKYEFHYDNVLWAFLTLFTVSTGEGWPTVLKHSVDATFEDQGPSPGYRIEMSIFYVVY
FVVFPFFFVNIFVALIIITFQEQGDKALSECSLEKNERACIDFAINAKPLTRYMPEDTQS
FQYRMWKFVVSPPFEYSIMIMIALNTVVLMMKFHGAPDFYEAMLKYLNIVFTTLFSLECI
LKIIAFGPLNYLKDAWNVFDFVTVLGSITDILVTEIKTTDRLLNLSFLRLFRAARLIKLL
RQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIELNEDTAINHHNNFR
TFLQALMLLFRSATGEAWHEIMLSCLSHRPCDELSGTSGKDCGSDFAYFYFVSFIFLCSF
LMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRISYMDMYNLLRVIS
PPLGLGKNCPNRVAYKRLVKMNMPIADDNTVHFTSTLMGLIRTALEIKLASGMVLQRLRD
AELKKEISTVWPSLSQKTMDLLVTPHKPNELTVGKVYAALMIFDYLKQNRARRLQQMANS
DPQYKVEALFKPLLPLTHMQGSPSAPQSQQSLESFRQVVSSNSINNGGMLPGYDPRNKSV
VSTGMERPTEGVYPKPKRTISKGPSVDTSNAVNQESVGLNSVSSTVPVPVPGPGLESQGR
AASMPRLNVELQAGRDASSMRRSVTTVAPQRPQEVNLRDYTLEKPRQERTHHHHHHHHCH
HRRDRDKDKRQGSLDTPLEPPNSAGEPEQSTSEPAASRERAHKRGRSHERKHHHSSADKQ
RYYSCDRYCSRERCCPISATAACSYREEQETSKKQGSGLVKGSQDASRSSSSTPSRGRRQ
LPQVPHTPRPGVGYKTAHPSQVHFVSSQASQSPGRLSRGLSEHNTLRHSGSYYFPCPVTR
ISSEPFLGQGHGEALGSPYSSFQNQLDVFQDVASLSPTPSAEQSPRTTLPRRMGALHPTF
GVDPSVPNGYHLSLGGSTSPGTGYRALRYRR
NT seq
6936 nt
NT seq
+upstream
nt +downstream
nt
atggctcgttttgaagacgatgcgtccagccgcttcagaggcagcggccccccggggcca
gccagaggggccaaccggcagccggggcctcccgggggccaaaggatgtacaaacagacc
atggctcagagagccaggaccatggctatttacaaccccattccagtcaaacagaactgc
ctcaccgttaaccgctccctgtttatctttagcgaggataatatcatccggaaatatgcc
aaaaagatcacagaatggcctccattcgagtacatgatcctggccaccatcatagcaaac
tgcatcgttctggccttggagcaacacctgccagctttggacaaaaccccgctgtcagaa
cgtttggatgacacagagccctactttattggaatattttgctttgaggcagggatcaag
atcattgccttgggttttgcttttcacaaaggctcctacctacgtaatggctggaatgta
atggactttgtggtggtcctaacagggatcctggctactgtaggggctgattttgatctg
agaacactgagagcagtcagagtcctgcggcccctcaaactcgtctctggcattccaagc
cttcaagtggtgttgaagtccattatgaaagctatggtacctctgctccagattggaatg
ctgcttttcttcgccattctcatgtttgctatcatcggtctggacttctacattggcaaa
tttcatcgaacatgcttcaagaatggaacaaaagagcaggtggcagatttcccttgtgga
cctgaacctccagcaaggacctgtggcaaagggaatatctgtgaagagtactggcttgga
cctaactttgggatcacaaactttgacaacatcctgttcgccattctcactgttttccag
tgtatcaccatggaaggatgggtggacatcctgtacaatgccaatgatgcctctgggaac
atgtggaactggctctacttcatccctctcatcatcattgggtcgttcttcatgctcaac
ctggtgctgggtgtgctgtcaggagagtttgcaaaggaaagggagcgtgtggagaagagg
caagaattcctgaagcttcgtcgacagcagcagattgagagagagctgactggttatttg
gagtggatctgtaaagcagaagaggtgatgttggctgaggaagacaagaacgctgaggag
aagtctctggatggagcgtggtacaaaaggaaacataaccccaactctgtgctgaaaaga
acaaagaaaagtaagaatgacctcatcaatgcagaagaaggggaggaccatttcactgac
atttcatcagttggccccccagggtcgccatttgcacgagcgagtgtgaagagcaagaac
gagagctcgtcttacctgaggaggaaggagaagagaattcgcttcaccatccgccacctg
gtcaaatcccagacgttttactggactgtattatgtcttgttggcctcaacacgctgtgt
gtagctatagtacactatgaccagccagagtggcttacgtatgcattatacctggccgag
tttgtgtttctgggcttattcctggctgagatgaccataaaaatgtacggccttggaccc
cagacttacttccactcttcttttaactgttttgattttggggtcattattgggagtatt
tttgaggtggtctgggctgcgatcaaacctggtgcttcatttggaatcagtgtcctgaga
gcgctgcgacttctccggatcttcaaagttaccaagtactggaactctttgaggaacctg
gtggtatccctactcaactctatgaagtccatcatcagtctgttgttcctgctcttcctc
ttcatcgtggtctttgctctgctgggaatgcagttgtttggaggacagtttaactttgag
gatgaaactccaacaaccaactttgacacattcccagctgctattctcactgtgtttcag
attctaactggggaggactggaatgctgtcatgtaccatgggatagaatctcagggtggt
gtgcatggaggaatgttctcctccatttatttcatcatacttactctttttggaaactac
acactgctcaacgtgttcttggccatcgctgttgataaccttgcaaatgcccaggagctt
acaaaggatgaagaggagcaggaggaggccatcagcaaaaagctggctcttcagaaggct
aaagaggtacaggaagtcagccctatgttggctgctaacatttcaatcacaacgagttat
gtctgcaccccagtccatcactacctgagcaatgagcagcagaggtcagtcaagatgatg
tctgtctgggagcagaaagccagccagctgaggaggcacaatcaggcgagctgtgaggtc
ttatatgatcccgaggagtgtgtctgcctcccctctggtcttcagatgcggcctgacatg
aagacccaccttgaccggcccctggttgttggacattccgatgggctgttgatgagaggc
catcaacatcaccgtcaccagccgggcacgccggaggaaacagagactgccgctgatcca
ccgtccgctccgcctcattctaatcaccgtcaccaccgccacagagacagagggcgggct
aaggtgaaagaagagcccaatgacagcggaggtgacagtgggaaagatgggagacaacac
gtccatcacagccactccaaaaatcatgactacagctgtagacaagaggggaagagcggg
aggtcctccagcaaagacaggagcaggaagcatcaccatcacagttcaatggatgagagc
gcaggtgtgggggccacaagagagagagagcatcggcatcatcattcacatcgacagtcc
agaggggggaatggggcagtgaatggtgggggtcgaggcgagcacaggcttcaccgtaaa
gatggtcgatcatctaacaaggatggggatagggagggcaagaggaggaggcatcgaaca
cacgggtcgaggagtcagtccagggctgaagtagaggagacaaacgagagagatgagcca
aatactaacaggtttggtgagtcagatgacatctcccagcagccaggctctctggaaacg
tctggccagccagaggactcagacaaccagaagaatgtcagacgaacaggccagacctcc
atccgcattccccctgtgactatcaccacacctggagagatcactatgatacaaatgaac
agtactgataatgaatcaatgcctatgaatgagaagaacctgaaggatcaatgtcactct
ggaccaagacccatcttagcttacagctcaatgtttatctttggacagaccaacccggtg
aggaggttatgtcactacattgtgaccctgcggtattttgagatgtccatcctggttgtt
atcgcaatgagcagcattgctctggcagctgaggatccagtctggacaaatgcccctcgc
aacaatgtgctcaaatatctggactatgcctttactggtgttttcacgttcgaaatggtg
atcaaaatggtggatcttggactgcttctccatcctggatcttacttcagagacctgtgg
aacattctggacttcatagtggtcagtggggctctggtggcatttgcattttcggggact
aaaggcaaagacatcagcaccatcaagtcactgagggttctcagggttcttaggcctctc
aagaccatcaaacgtctgccaaaactcaaggccgtgtttgactgtgtggtcaactcttta
aagaacgtgctgaacatcctcattgtttacatcctcttcatgttcatttttgctgttatt
gcggttcagctcttcaagggaaagtttttctattgcactgatgagtccaaagccctggag
aaagattgcaaaggacaatttcttgactacgacaaagaaacagtggcagcaatgccaaga
gagtggaaaaaatatgaattccattatgacaatgtactctgggccttcctaactctcttc
acagtctcaactggggagggctggccaactgttctgaaacactctgttgatgctaccttc
gaagatcaaggtcccagccctggctaccgcatagagatgtccatcttctatgtggtctac
ttcgtggtctttccatttttctttgtcaacatctttgttgctctaataattatcaccttc
caagaacagggagacaaggccttgtctgaatgcagtttggaaaagaatgagagggcttgt
attgactttgccataaatgcgaaacctttgacacgctacatgccagaggacacacaatcc
ttccaatacaggatgtggaagtttgtcgtttcacccccatttgagtactccattatgatc
atgattgctctcaacactgtggtactcatgatgaagtttcatggagctccagacttttat
gaagcaatgctgaagtaccttaacatagtgttcaccactcttttctctctggagtgcatt
ctcaagatcatcgcctttggtcccctgaactacttaaaagatgcctggaatgtatttgac
tttgtgacagttttggggagcatcactgacatcctggtgactgaaatcaaaactacggac
agactattgaatttgagcttcctgaggctcttcagagcagctcggctcatcaagttgctg
aggcaaggctacaccatccgcatcctgctctggacctttgtccagtctttcaaggccctg
ccatatgtgtgcctgcttatcgccatgctgttcttcatttatgccatcattgggatgcag
gtgtttgggaacattgagctgaatgaagacacagctatcaaccaccataacaacttccgc
acttttctccaggctcttatgctgctgttcaggagtgcaactggagaagcctggcatgag
atcatgttgtcgtgtctgagtcatcgaccctgtgatgagctttcagggactagtgggaaa
gactgtggcagtgattttgcctacttctactttgtttccttcattttcctctgctccttc
ttgatgctgaatctctttgtggctgtcataatggataactttgagtacctgaccagagac
tcctccatcctggggccgcatcatcttgatgaattcattcgagtttgggccgagtatgac
ccagctgcttgcggacggatttcctatatggatatgtacaatttgttgcgcgttatctca
cccccccttggcttagggaagaactgccctaatagggtagcatacaagcgtcttgtcaaa
atgaacatgcccattgctgatgacaacacagtccactttacctccactctgatgggcctg
attcgcactgcgctggagatcaagttggcctcaggtatggtgctgcagcgtttaagggat
gcagagttaaagaaagaaatatccacagtttggccgagcctcagtcagaagaccatggat
ttgttggtgacgccacacaaacccaatgagctaacggtaggaaaggtttacgcagcactg
atgatctttgactacttgaaacagaatcgagcgaggaggctgcagcagatggccaactct
gacccccagtacaaggtcgaagctctgtttaagccattgctgcctctgactcacatgcag
ggctcacccagtgctcctcaatctcagcaaagcctggagtcattccgtcaagtggtcagc
tctaactccatcaacaatggagggatgctgccaggttatgaccccagaaataaatcagta
gtttccactgggatggagaggcccaccgagggggtctatcccaaaccaaagagaaccata
tccaaaggcccatcagtggacacatcaaacgctgtcaatcaggagtcagtagggctgaac
agtgtcagcagcacagtcccagtcccagtccctggtccaggtctggagagccagggcagg
gctgcttcaatgcctcggctcaacgtggagctccaggctggccgtgatgctagctctatg
agacgctctgttaccactgtagctccacagcggccccaggaggttaacctcagggactac
accctggagaaacctcgtcaggagagaacacatcaccatcaccaccaccatcactgccac
caccgcagagaccgggacaaagacaagagacaagggtctttggatactcctcttgaacct
cccaactcagctggcgaaccagaacagtcgacatctgaacctgctgcctccagagagcga
gcccataaacgtgggcgctcccatgaaaggaaacaccatcactcctcagcagacaagcaa
cgctactactcctgtgaccgctactgcagccgggaacgctgctgtcccatatctgctact
gccgcctgctcctaccgagaggagcaggaaaccagcaaaaagcagggcagtggtttggtt
aaaggcagccaagatgcatcaagatccagttcaagcacaccaagccgtggacgccggcag
ctcccacaggtcccacacaccccacggcctggggtgggatataagactgcacacccttct
caagtgcactttgtgtctagtcaggcttctcagagtcctggccgactaagccgtggcctg
tcggaacacaacaccctgcgtcatagtggttcctactacttcccctgccctgtcactcgt
atcagctcagagccctttctgggccagggccatggtgaggccctgggcagtccttacagc
agcttccagaaccagctggatgtcttccaggatgtggcatcactgtcccctacccctagt
gctgaacagtcaccccggaccacactgcctcgaaggatgggagccctacatccaactttt
ggtgtagacccgagtgtgcccaatgggtaccacttaagtttagggggcagcaccagccca
ggcactggatacagggcactgaggtacagaaggtag
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integrated database retrieval system
