Gambusia affinis (western mosquitofish): 122828162
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Entry
122828162 CDS
T07758
Symbol
smarcad1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gaf03036
]
122828162 (smarcad1a)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
122828162 (smarcad1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
CUE
HHH_3
UBA_8
TAP_C
UBA_N4BP1_C
T2SSK
HHH_5
UBA_4
Motif
Other DBs
NCBI-GeneID:
122828162
NCBI-ProteinID:
XP_043967403
LinkDB
All DBs
Position
LG03:complement(20324508..20335688)
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AA seq
1090 aa
AA seq
DB search
MSMFNLDRFRFEKKGPNKDPGCVSKSPDSEKENEPAQMKSFKATPKSHARGVVFEEVIST
DLEEDDVMAEPNTKIQIPTKNKRSVQKLPKDVTPLNTDDEDEEMDEKINKLLELFPQLSR
TEVIEISGSTSTLEGAVAVCLLKFGDKGAPNDGKKRKQDGSSCSQDRGDIQPSKKRKPSF
VSDEEGEGDEPSWEKQEAMVRKLQKRFPDQDKEELRMVLQEHNWDVEEALQVLQMFSESD
NSSSSLVIPIEQKSKDKAESTRNYSEDNSETSGMSTDDTENSSAESDNSEKAKPKRKQMP
IRDYKDSKVQKSTERKREAHHRDPKDHRDADKADGNSTDNTKDSEDEVEMEDTKLSKINT
IVHTLPSRIPFLSYSRMQTSTSSTSKPSPSSSASQVLSKFSSDTGLAKKQAAERKKKARA
TEEQVSSDEEENVVTSEFEDSDDELESINVKKDVKDEILAFFQDASIDELSLISGCSVKK
AQRIVELRPFDSWESLWDVFHKGNGLSDDLMHGCKVVLKERKVILGLMSKCQTISLKMVQ
RVTEVMESGTGSTKQPSLLNSQLKLKPYQLIGLKWLLLLNEHKLSGILADEMGLGKTIQA
IAFLAQLYENGIEGPHLITVPSSTLDNWVRELRLWCPALEVLIYYGSVEERRYLKHDILN
GDVHFNVIVTTYNLAIGNDSDRSLFRKLPIKYAIFDEGHMLKNMNTLRYRHLMAINAEHR
LLLTGTPLQNNLLELMSLLNFIMPTMFSSSTMQLSKMFSMKSHDEQSRFERDRITQAKLI
MKPFILRRVKNEVLKQLPAKEEKIEFCSMSDKQQVLYEALLKKLKSTTTGEKRELCNVMM
QLRKMANHPLLHRQYYTTEKLQAMSKLMLKEPTHHDASAALIQEDMEVMSDFELHRLCQQ
YSSIGSFQLDTSLLLDSGKFLHLKELLASLKSQGDRVVLFSQFTMMLDIVEVLLKHLQHR
YVRLDGSTPIADRIVLIDEYNTDPDIFVFLLSTRAGGLGINLTSANVVILHDIDYNPYND
KQAEDRCHRVGQTRTVQVIKLISKGSIEDCILQLGQKKLKLEQDMTAADQDDEGSIPEDM
ASLLKASLGL
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgagtatgttcaatctagaccgctttagattcgagaagaagggaccaaacaaagatcca
ggttgcgtatccaaaagtccggattctgaaaaggagaacgagccagctcagatgaaatca
tttaaagccacgccaaagtcccacgcaagaggtgtggtttttgaagaagtaatttccaca
gatttggaggaagatgatgtcatggccgagccaaacaccaaaatacaaatacccacaaag
aacaaaagatcagttcagaagctaccaaaagatgtaacaccactaaatacagatgatgag
gatgaagagatggatgagaagataaacaaactattggaattgtttcctcaattatcaaga
actgaagtgatagagatctctgggagtaccagcacgttggagggcgctgtagctgtttgc
cttttaaaatttggggacaaaggagctccaaatgatggcaagaagagaaagcaggatgga
tccagctgttctcaggacagaggtgatattcaaccgagtaaaaaacggaaaccgtctttt
gtttctgatgaagagggcgaaggggacgaaccaagctgggaaaagcaggaggccatggtg
agaaaactccagaaacggtttccggaccaggacaaggaggagttgaggatggtgcttcag
gagcacaactgggatgtggaagaagctcttcaggttcttcagatgttctcagaatcagat
aatagtagcagcagcttggtgattccaatagagcagaaatcaaaggacaaagctgaatca
accaggaactactcagaggacaacagtgaaacaagtgggatgagtacagatgatacagaa
aacagttctgctgaatcggataattcagaaaaagccaaaccaaaaaggaaacaaatgccc
atcagagattacaaagactcaaaggttcagaagtctactgaaagaaaaagagaagcacat
catagggatcctaaagaccacagagacgctgataaagcagatgggaacagtacagacaat
acaaaggacagtgaagacgaggtggagatggaggacacaaaactctccaaaattaatact
atcgttcatactttaccttcacggattccatttttatcatactctcgtatgcaaacctct
acctcatccacctcgaagccttcgccttcctcctcggcctcccaggttttgtccaagttt
tctagcgacacgggactcgcaaagaagcaggcggcggagagaaagaagaaggcacgagct
actgaagaacaagtcagttctgatgaggaagagaacgtagtaacaagcgagtttgaggac
tctgacgacgagctggagagcatcaatgtcaagaaggatgtgaaagatgaaatacttgcg
tttttccaggatgcatcgatagacgaactgtcgctgatttctggctgttctgttaaaaag
gcccagaggattgtggaactgagaccctttgatagctgggaatccctgtgggatgtcttc
cacaagggaaacggactttcagacgatttgatgcatggctgcaaggtcgtcctcaaagag
aggaaggttatccttggactaatgtctaaatgtcagacaatttctctaaaaatggtgcaa
cgggtcacagaggtgatggagagtgggactggctccacaaaacagcccagtttactaaac
agccagttgaagctcaaaccgtatcagctgattggcctaaagtggcttctgcttctgaat
gaacacaaactgagtggcatccttgctgatgaaatgggtttggggaaaaccatccaggct
atagcatttcttgctcagctgtatgagaacggaatagaaggtcctcatctcatcactgtg
ccttcctccacactggataactgggttagagagctgaggctgtggtgccctgctcttgaa
gttcttatttattatggatctgtggaagagcgacgctacctcaaacatgacatcctcaac
ggggacgtccattttaacgtgattgtgacgacgtacaacttagccataggtaacgacagc
gatcgatctctttttcgtaagctgcctatcaaatatgccatctttgatgaaggtcacatg
ttaaagaacatgaacactctgcgctaccgccacctaatggccattaatgctgagcatcgc
ctcttgctgacaggaactcctttacaaaacaacctgttggagctgatgtcgctgttgaat
ttcataatgcctaccatgttctccagctccacaatgcagctctccaagatgttttctatg
aaatctcacgacgaacaaagtcgatttgagagggatcgaattactcaagccaaactcatc
atgaaaccctttattctgcgacgagtcaaaaatgaggttctcaagcagctcccggccaaa
gaagaaaagatcgagttctgctccatgagtgacaaacagcaggttctctacgaagcgctg
cttaagaaactaaagagtaccaccactggagagaagcgtgagctgtgcaatgtgatgatg
cagctgaggaagatggccaaccatcctcttcttcacagacagtactacaccacagaaaag
cttcaagctatgagcaaacttatgctaaaggagccaacccaccacgatgccagtgctgct
ctgattcaggaagacatggaggtgatgtcagattttgaactccatcgtctgtgtcagcag
tattcctctatcggctccttccagctcgacacaagtctccttctcgactctgggaaattc
ctccacctaaaagagctgctggcctctctaaaaagccagggagacagagtggtgctattc
agtcagtttaccatgatgttggacattgtggaagttctcctgaaacatctacagcatcgt
tacgtcagactggatggatccactcccatcgctgacaggattgttttgattgatgagtac
aacacagacccagacatcttcgtgttcctgttatcgacacgtgccggaggactcggcatc
aacctcacctctgctaacgttgtcatcctgcacgatatcgactacaatccctacaacgac
aaacaggcagaggatcgatgtcaccgcgtgggccagaccaggactgtacaggtgataaag
ctgatcagtaagggcagcatagaggactgcatcctgcagctcggtcagaagaagctaaag
ctggaacaggacatgactgctgctgatcaagatgatgaaggaagcattcctgaagacatg
gcctctttactcaaagcctctcttggactgtga
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