Gambusia affinis (western mosquitofish): 122828210
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Entry
122828210 CDS
T07758
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03082
ATP-dependent chromatin remodeling
gaf03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122828210 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122828210 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gaf01009
]
122828210 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122828210 (smarcb1a)
03036 Chromosome and associated proteins [BR:
gaf03036
]
122828210 (smarcb1a)
Protein phosphatases and associated proteins [BR:
gaf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122828210 (smarcb1a)
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122828210 (smarcb1a)
SWI/SNF complex
122828210 (smarcb1a)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122828210 (smarcb1a)
PBAF complex
122828210 (smarcb1a)
SWI/SNF complex
122828210 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
122828210
NCBI-ProteinID:
XP_043967498
LinkDB
All DBs
Position
LG03:27733736..27742174
Genome browser
AA seq
370 aa
AA seq
DB search
MALSKTFGQKPVKFQLEEDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLATVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAVSISTEPPTYLREQKAKRNNQWV
PTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENATQPEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
LLEDQTDQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGEADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTW
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttagcaaaacgtttgggcaaaaaccggtgaaatttcagcttgaagaggatgga
gaattttatatgatcggttctgaggtggggaactacctgcgcatgttcagaggctcccta
tataaacgatacccgtcgttatggagaaaactggcaacagtggaagaacggaagaaaatt
gtagagtcttcacatgatcacggctacactcagctggccaccagcgttacgcttctgaag
gcctcggaggttgaggagatcctcgaagggaacgatgaaaaatacaaagctgtgtctatc
agcactgagccgcccacctacctcagggaacagaaggcaaagaggaacaaccagtgggtt
cccacgctgcccaacagttcccaccacctggacgccgttccctgctccaccaccatcaac
cgcagcaggctgggtcgggacaagaagaggacctttcccctgtgcttcgatgaccacgac
ccggcggtgatccatgaaaatgccacacagcctgaggttcttgttccaatccgtcttgac
atggagatcgagggtcagaaactgagagacgctttcacctggaacatgaacgaaaagctc
atgacacctgagatgtttgcggagatcttgtgtgacgacctggatctgaaccccctggcc
ttcgtccccgctatcgcctcagccatccggcagcagatcgagtcctacccgacagacagc
ctcctggaggaccagacggaccagagggtgatcatcaagctgaacatccacgtgggcaac
atttcgctggtggaccagtttgagtgggacatgtcggagagagaaaactctccggagaag
tttgccctgaagctctgctcggagctcggcctgggcggagagttcgtcaccaccatcgcc
tacagcatccgaggtcagctgagctggcatcagaggacgtacgccttcagtgagaacccg
cttcctaccgtggagatcgccatcagaaacacaggcgaggcggaccagtggtgccccctg
ctggagaccctgacagacgcagagatggagaagaagatcagagaccaggacagaaacacg
agacgaatgaggcgtctggcgaatacgtggtag
DBGET
integrated database retrieval system
