Gambusia affinis (western mosquitofish): 122828475
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Entry
122828475 CDS
T07758
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122828475 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122828475 (smarca2)
03036 Chromosome and associated proteins [BR:
gaf03036
]
122828475 (smarca2)
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122828475 (smarca2)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
122828475 (smarca2)
Chromatin remodeling factors
BAF complex
122828475 (smarca2)
PBAF complex
122828475 (smarca2)
GBAF(ncBAF) complex
122828475 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
122828475
NCBI-ProteinID:
XP_043968008
LinkDB
All DBs
Position
LG03:complement(30039575..30077333)
Genome browser
AA seq
1607 aa
AA seq
DB search
MSTPSDTSGGMSHPGPSPGAGLSPGPILGPSPGPDPSPGSVHSMMGPSPGPGTPNTPHGM
QAQGQGDYSQDNMYPMHKPMEAAMNDKTMAEAMHFSHMKGVGMRSLHSGMGPPQSPMDQH
SQGYMSPHPSPMGIHEHASSPMSGGGGGPTPPHMPPSQPGPMMSMDPQGGMASMSGMGQP
GRGPSSFSPVQLQQLRAQILAYKILARGQPLPENLQLAVQGKRSLPTMQQQQQAPLPPQQ
QQPQQPQQPQQQPQPQQQQQQQQASGASPYRPSGMSMAPMSGPQSSPCPTPALQGHNQST
GAKPWADGQSNDNQAQKHLTPVPSGRPSPAPPQAPVGAPGPVPGSSGAVHPPGQQVSPML
QMQQKQNRITPVQKPQGLDPVGILQEREFRLQARIAHRIQELESLPGSLPPDLRTKATVE
LKALRLLNFQRQLRQDVVACMRRDTTLETALNSKAYRRSKRQTLREARMTEKLEKQQKLE
QEKKRRQKHQEYLNSILQHAKDFKEYHRSVSGKIQKLTRAVANWHTNTEREQKKETERLE
KERMKKLLEEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTTLVYEHKAAQAAKEKKRR
KTKKKKVEGDGEGTSAIGPDGEPMDESSQMSELPVKVIQTETGKVLQGTDAPKSSQLEAW
LEMNPGYEVAPRSDSEESGSEFEEEDEEEMGKAETEEKKKVDPNGDEVVESDAKNVIETA
KQDVDDEYSVPTGQTSSQSYYGVAHAVIERVEKQSSLLINGMLKQYQIQGLEWMVSLYNN
DLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWVYELDKWAPSVVK
IAYKGTPGLRRGFVPQLRSGKFNVLITTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHC
KLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG
ERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQRVLYRHM
QKGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICNHPYMFQHIEESFAEHLGYPNGIITG
HDLYRASGKFELLDRILPKLHATGHRVLLFCQMTSLMTIMEDYFSYRNFQYLRLDGTTKS
EDRAALLKKFNEEGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHR
IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILE
HEEQNEDEDEVPDDETLNQMIARNEDEFDMFMRMDMDRRREDARNPKRKPRLMEEDELPS
WIIKDDAEVERLTYEEEEEKMFGRGSRCRRDVDYSDALTEKQWLRAIEDGNLEEMEEEIR
LKKRKRKRRQDKDSSSRDDGGMKAKKRRGRPPAEKLSPNPPKLIKQMNTIIDTVINYRDG
SGRQLSEVFVQLPSRKELPEYYELIRKPVDFKKIKERVRNHKYRSLGDLEKDVMLLCQNA
QTFNLEGSQIYEDSIVLQSVFKSARQKIAKDEDSEDDSDEDDDDDYDSEAEAKSVRVKIK
LGRDGRSHDKGKKRQSRGKAKPVVSDDDSDDDQDDNDLSDKSKSDDD
NT seq
4824 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgccgtcagacacgtcaggtggcatgtcccatcctggcccctcaccaggggca
ggcctgtccccagggcccatcttgggccccagccccggacccgacccttcaccaggttct
gttcacagcatgatgggccccagtcctggaccagggacacccaacacaccgcacggcatg
caggcccagggacaaggcgattactctcaggacaacatgtatcctatgcataagcccatg
gaggcggccatgaatgacaagacgatggccgaggcgatgcatttcagtcacatgaaaggt
gtcggcatgcgatccctgcacagcggcatggggcctcctcagagccccatggaccagcac
agccaaggatacatgtctccacatccatccccaatgggaatccatgagcatgcctccagc
cccatgtctggaggtggaggcgggccgaccccgccccacatgcctccatctcagcccggc
cccatgatgtccatggaccctcagggaggcatggccagcatgtcggggatgggccagccg
gggcgcggcccctcctccttcagccccgtccagctgcagcagctcagggcgcagatcctg
gcctataagatcctggcccgcgggcagccgctgcccgagaacctccagctggctgttcaa
ggcaaaaggagcctacccacgatgcaacagcagcagcaggcgccactgccgccgcagcag
cagcagccacaacaaccacagcagccgcagcagcagccgcagccgcagcagcagcagcag
cagcagcaagcatctggtgctagcccatacaggccttcaggtatgtcgatggctcccatg
agcggcccccaatccagcccctgcccaacaccagccctgcaaggacacaatcaaagcacc
ggagccaagccttgggctgacggtcaatctaatgacaatcaagcacagaagcacctcacc
ccggtccccagtggccgtccgtctcccgctcccccccaggcgcctgtaggggccccgggc
cccgtcccggggagctcaggggccgttcaccctccagggcagcaggtgtcccccatgctc
caaatgcagcagaaacagaaccggatcacaccggtccagaagccccagggtttggacccg
gtgggaatcctgcaggagagagagttcagactgcaggcccggatcgctcatcggatccag
gaactggagagtctgcccggctctttgcctccggacctccgaactaaagcgacggtggag
ctcaaggcgctgcggctgctcaacttccagcggcagctgaggcaggatgtggtggcgtgt
atgaggcgcgacacgaccctggagacggccctcaactcgaaggcgtacaggcgcagcaag
cggcagacgctcagggaggcgcgcatgacggagaagctggagaagcagcagaaactggag
caggagaagaagcggcgacagaaacaccaggaatatctcaacagtattctccaacatgcc
aaggactttaaggaataccaccgctcggtgtccgggaaaatccagaaactcacccgagcc
gtcgccaactggcacacaaacaccgaacgggagcagaaaaaggagacggagcggctggag
aaggagaggatgaagaagctgctggaagaggatgaggaaggctatcgaaaactcattgac
cagaagaaggacaagcgtctggcctacctgctgcagcagacggatgaatacgtggccaac
ctcaccactctggtgtacgaacacaaagccgctcaggctgccaaggagaagaagagaagg
aagacgaaaaagaagaaggtggagggagacggtgaaggtaccagcgccattggaccggat
ggcgagcccatggatgagagcagccagatgagcgagctgccagtcaaagtgatccagacg
gagaccgggaaggttctgcaggggaccgatgcccccaagtccagccagctggaggcttgg
ctggagatgaaccctgggtatgaagtcgctccccgttcagacagcgaggaaagcggctca
gagttcgaggaagaggacgaagaggaaatgggcaaggcagaaacggaggagaagaagaaa
gttgatcccaacggagacgaagtggttgagagcgacgccaagaacgtcatcgagacggcc
aaacaagacgtggatgatgagtacagcgtccccactgggcagaccagctcccagtcgtac
tacggggtggcgcacgccgtcatcgagagggtggagaagcagtcgtctctgctgatcaac
ggcatgctcaaacagtaccagatccagggtttggagtggatggtgtccctctacaacaac
gacctgaacggcatcctggctgatgaaatgggcctggggaagaccatccaaaccatcgcc
ctcatcacctacctgatggagcacaagaggctcaacggcccctatctcatcatagttcct
ctctcgactttgtccaactgggtttatgaacttgacaaatgggctccttctgtggtcaaa
attgcttacaagggaactcctggtctgcgtcggggtttcgtccctcagctccgcagcggc
aagtttaacgtcctcataacgacgtatgaatacatcatcaaggacaagcacatcctggcg
aagatccgttggaagtacatgatcgtggacgagggccaccgcatgaagaaccaccactgt
aagctgacgcaggtgctgaacacccactacgtggctccgcgccgcctgctgctcaccggg
acgccgctgcagaacaagctgcctgagctctgggccctgctcaacttcctgctgcccacc
atctttaaaagctgcagcacctttgagcagtggttcaacgcgccgttcgccatgactgga
gagagggttgaccttaacgaggaagagaccatcctgatcatccgccgtctgcataaggtg
ctgcgcccgtttctgctccgcaggctgaagaaggaggtggagtctcagctgcccgagaaa
gtggaatacgtcataaaatgcgacatgtctgccatccagagggttctctaccgccacatg
cagaaaggcatcctgctgaccgacggctcggagaaagacaagaagggcaaaggcggagct
aagactctgatgaacaccatcatgcagctgaagaagatctgcaaccatccgtacatgttc
cagcacatagaggagtcttttgctgagcacttgggctacccgaatggcatcatcactggg
catgatctgtacagagcttctgggaagtttgagctcctggatcggatcctaccaaagctc
catgccactggacacagagtcctgctgttctgccagatgacgtctctgatgacgatcatg
gaggattatttcagctatcgcaacttccagtatctgcgcctcgatggaaccaccaaatcc
gaggaccgagccgcactcttaaagaaatttaacgaggaaggatctcagtacttcatcttc
ctcctcagtaccagagccggtggcctggggctcaacctgcaggccgccgacaccgtcgtc
atctttgacagtgactggaacccgcatcaggacctgcaggcccaggaccgggctcaccgc
atcgggcagcagaacgaggtccgcgttctgcgcctctgcaccgtcaacagtgtggaagag
aagatcctggctgctgccaaatacaaactgaacgtggatcagaaagtcatccaggccggc
atgttcgaccagaaatcctccagccacgagcggcgcgccttcctgcaggccattttagag
catgaggagcagaacgaggatgaagacgaggtccctgatgatgaaacgcttaaccagatg
atagcgcgtaatgaagacgaatttgatatgttcatgcgcatggacatggaccgtcggcgc
gaggacgcccggaacccgaagcgtaagcctcgtctgatggaagaggacgagttgccgtcg
tggatcatcaaggacgacgccgaggtggagaggctcacctacgaggaggaggaggagaag
atgtttggccgagggtcgcgctgccggcgggacgtggactacagcgacgcgctgaccgag
aaacagtggctgcgagccattgaggacgggaacttggaggagatggaggaggaaatccgc
ttgaagaagcgtaaacgcaaacggcgtcaggacaaagactcgtccagcagagacgacggc
ggcatgaaggccaagaagaggcgagggcgcccgccggccgagaagctctcgcccaacccg
cccaaactcatcaagcagatgaacaccatcatcgacacggtcatcaactacagagatggg
tcaggcaggcagctcagtgaggtgtttgtgcagctgccgtccaggaaggaactgccagaa
tattacgagctgatcagaaaacccgtcgacttcaagaagatcaaggagcgtgtgagaaac
cataaataccgaagtttgggcgaccttgagaaggacgtgatgcttctctgtcagaacgca
caaaccttcaacctggagggatcccagatatacgaggactccattgttctccagtctgtt
ttcaagagtgccagacagaagatcgccaaggacgaagacagcgaggatgacagcgacgag
gatgatgatgacgactatgactcagaggccgaagccaagtctgtgcgagtgaagatcaag
ctgggtcgggacggacgcagccacgacaaaggcaagaagaggcaaagccgcggaaaggcc
aagccggtggtgagcgacgacgacagcgacgacgaccaggacgataacgatctgtcggat
aaaagcaaaagcgacgacgactga
DBGET
integrated database retrieval system
