Gambusia affinis (western mosquitofish): 122828646
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Entry
122828646 CDS
T07758
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03030
DNA replication
gaf03410
Base excision repair
gaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122828646 (pole)
03410 Base excision repair
122828646 (pole)
03420 Nucleotide excision repair
122828646 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gaf03032
]
122828646 (pole)
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122828646 (pole)
Enzymes [BR:
gaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
122828646 (pole)
DNA replication proteins [BR:
gaf03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
122828646 (pole)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
122828646 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
Sigma70_ner
Motif
Other DBs
NCBI-GeneID:
122828646
NCBI-ProteinID:
XP_043968332
LinkDB
All DBs
Position
LG03:complement(15916558..15935219)
Genome browser
AA seq
2294 aa
AA seq
DB search
MVLQNSGRYKSDRGHSGANQENQDDGSSMSALKRLERSQFTDDMDARFGFDRMKEPGEKT
GWLINMHPTEILDEDKRMISAVDYYFIQEDGSRFKVALPFKPYFYIATKKNCEREVISYL
SKKFQGKVAKLEILPKEDLDLPNHLVGLKRSYIKLSFNTVDDLVKVKREISPAVRKNRER
EQSNDAYTSMLSSALSGGSVISADEDGTLKSIADQLDNIVDMREYDVPYHVRVSIDLKIH
VAHWYNVRYRGIAFPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYM
IDGQGFLITNREIVSENIEDFEFTPKPEYDGPFTVFNEDDEAALIQRWFDHVQETKPNIF
VTYNGDFFDWPFVETRAALHGLSMYREIGFQKDNQGEYKSSQAIHMDCLRWVKRDSYLPV
GSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQIFNKLTDDGHVLDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVERTMRHAVEEEEKIPLEQVTNFNEV
CDEIKKKLTSLKDVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKP
GATCQRRMAWQWRGEIMPASRSEFHRIQQQLESEKFPPLFPNGPPRAFHTLNREEQAKHE
KKRLADYCKKAYKKTHVMRLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
STAQDNGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTG
ANIITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNDKKPKVTISYPGAMLNI
LVKEGFTNDQYHELVDPTALTYNTRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYS
KAANMPDAELFDLISENRSMSKKLEEYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYV
ISRKPEGSPVTERAIPLAIFQAEPSVKKHFLRKWLKMPSLHDLDIRSILDWSYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQISHQP
LEAGQAADMEDFGAAPRPLQPAILISTKRKRASQGEDSQVESQDVELTQSWREILGPPPP
MGKTREERLVWLRYHKKKWELQLRQRKEKKKRRKLLDGEPQPVGGGVIRGGPSTGLGSFL
RRTARSILDMPWQIVQIAETNHPGLYKLWAVIGNDLHCMKLNIPRIFYVNQKVPKQDEGG
VAYRKVNRMLPRSNIVYYLYEYSVPEDMYQNHINEINADLSAPDIEGVYETQVPLLFRAL
VQLGCVCMVNKHIVRDLAGRETDSFDLEHLEMRSLAQFSYLEPGSVRHMYLYHHSQGQKA
LFGLFIPSQRKASVFILDTVRSNQMPNLSNVYTAERTALLEKTSEELLPPEKHTFEVRAE
NDIKAVSRALQRILLNYKDERRGPTLIAVQSNWELQRLAAGMPVLEEFPVVPVHVVDEIN
YNVLDWQRHGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLR
KHNHLLWLSPTARPDLGGKEADDSRLVMENDEKGSVEINSQGCYSTACVELDLQSLAVNT
ILQSQHVNDMEGGASLGVSFDVIQQFSLEDMMSGNQGASALASYDETALCSNTFRILKSM
VVGWVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLHNMMKKVFLQLVAEFKR
LGSTVVYGNFNRIILCTKKRRIDDAIGYVGYITKSIHSREIFHSLSITFSRCWEFLLWMD
PSNYGGVKGKLPSSVLYGEEGAKQKKRKQGEEDEEGSEDEDEDDAEEDDGDAETDEVEEL
IESNWNVMHYLPQTASCQKYFLMIVSAYIAAVYHSMKEELRRNAPGATPVKRRAGSQASQ
QAVGDLSALPGMISFSQEYVASELTQNIFTITQKIQKKVTGTRNATQTSEMFPVLPGSHL
PLNNPALEFVKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSEEAQFRDPCNSYILPE
VICHHCNFCRDLDLCKDPTVAQDGSVLPQWFCSNCQMQYETESIETALVDALQKKLMSYT
LQDLVCTKCKGVKEANMPLYCACAGNFDLTFSAKSFSEQTAVFRNIASHYNMRFLGETID
WLLEMSPQISQSRH
NT seq
6885 nt
NT seq
+upstream
nt +downstream
nt
atggttttgcagaacagcggacgatacaaatcggacaggggccacagtggagcaaaccaa
gaaaaccaggatgatggatcctccatgtcggcgctcaagcggctggagcgcagccagttc
accgacgacatggacgcccgcttcggcttcgacaggatgaaggagcccggggagaaaacg
ggctggctgatcaacatgcaccctactgagattctggatgaagacaaaaggatgatcagt
gccgtggactattattttatccaggaggacgggagcaggttcaaggtggctcttcccttc
aagccttacttctacatagctactaaaaagaactgtgagagagaggtcatctcatatttg
tccaagaagttccaaggaaaagtggcgaaacttgaaattctcccaaaggaggacttggac
ctgccaaaccatctagttggactgaagagaagctacatcaagctgtcattcaacacagtg
gacgatctagtcaaagtcaagcgtgagatttctccagccgtacgcaagaacagagagagg
gagcagtccaacgacgcctacacatcaatgttgtcaagtgctctgtcaggaggcagcgtg
atctcagccgatgaggacgggacgttgaagagtatcgccgatcagctggacaatatcgtg
gacatgagagagtacgatgtcccttatcacgtccgagtgtccatcgacctcaagattcat
gtggctcactggtacaacgtccgataccgaggcattgccttcccgccagagattgtgcga
cgagacgatctggtcgagcgcccggacccagttgttctggctttcgacatcgaaaccacc
aaacttcctctgaaattcccagatgcagagacggatcagattatgatgatctcctacatg
atcgacggacagggttttctaatcacgaatagagagattgtctccgagaacatcgaggat
tttgagttcacccccaagccagaatatgacggacctttcacagtttttaacgaggatgat
gaggctgctctcatccagaggtggtttgatcacgttcaagaaacaaagccgaacatcttc
gtcacttacaacggagacttttttgactggccttttgttgagactcgcgcggcgctccat
ggactgagcatgtacagggaaatcggtttccagaaggacaaccagggagagtataaatcc
agtcaggccatccacatggactgcctcaggtgggtaaaaagggacagctacttgcctgtg
ggaagtcacaacctgaaggcagcagcgaaggctaaactgggctatgacccggtggagctg
gacccagaggagatgtgccgaatggcaactgaggaaccacagaccctagcaacctactct
gtgtcagacgctgtggccacatattacctctacatgaaatatgttcaccccttcatcttc
gccctgtgcaccatcatccctatggagcctgatgaggtgctgcgtaaaggttcaggcacc
ctgtgcgaagccttgctcatggtgcaggccttccacgccaacatcgtcttccctaacaag
caggagcagatctttaacaagctgacggacgacggccacgtcctggactctgagacgtac
gtgggaggccacgtggaggcgctggagtccggagttttccgcagcgacatcccctgccgc
ttcaagatgaacccggctgccttcgactttctgcttcaaagagtcgagaggacgatgcgt
cacgccgtcgaagaggaagaaaagatccctctggagcaggttaccaactttaacgaggta
tgtgatgaaatcaaaaagaagctgacctccttgaaggatgtcccaaacaggatcgaatgc
cccctcatctaccatctggacgtcggggccatgtaccccaatattattctcacaaaccgt
ctgcagccatcagctatggttgatgaggccacatgtgctgcctgtgactttaacaaaccc
ggggccacctgccagaggaggatggcctggcagtggagaggagaaatcatgcctgcaagc
cgcagtgagtttcaccgcatccagcagcagctggagtcggagaagttcccacctcttttc
cccaacggccctcctcgggctttccacactctgaaccgggaagagcaggccaaacacgag
aagaaacggctggcagattattgcaagaaggcttacaagaagactcacgtcatgcggctt
gaggagcgagttaccaccatatgtcagagagaaaactctttctacgtcgacacagtcaga
gctttcagggatcgccgttatgaattcaaaggacttcacaaagtgtggaagaagaagctg
tcaacagctcaggacaatggagatgctgcggaggtgaagcgctgcaaaaacatggagatt
ctgtacgagtctcttcagctggcccataaatgtattcttaactctttctatggctacgtc
atgagaaaaggggcgcgctggtactccatggagatggctggcatcgtgtgcttcactgga
gccaacatcataactcaggccagagaacttatcgaacaaatagggaggcctctggagctg
gacactgacggaatctggtgcgtcctccccaacaccttccctgagaactttgtggtaaaa
accagcaatgataaaaaacctaaagtgaccatctcttacccgggggccatgctcaacatc
ctggtgaaggagggattcaccaatgatcagtaccacgagctggtcgacccaacggcgctc
acttacaacacccggtcagagaacagcatcttcttcgaggtggacggaccgtatctagca
atgattctgcctgcctccaaagaggaagggaagaagctgaagaagaggtatgccgtgttc
aacgaggacggctcattagctgagctcaagggctttgaagtgaagaggagaggagagctt
cagctcattaagatttttcagtcctctgtgtttgaggcattcctcaaagggaccaccctg
gaggaggtctacgcgtcagtggccaaggtggccgactactggctggatgtgctttacagc
aaggccgccaacatgccggatgcggagctgttcgacctgatctcagagaaccgctcgatg
tccaagaaactggaggagtacggcgagcagaagtccacgtccatcagcacggccaagagg
ctggccgagttcctgggagaccagatggtgaaagatgctggtctgagctgtcgctacgtc
atttcccggaaaccagagggttccccagtcacagaaagggccattcctctggccatcttc
caggctgagcccagcgtgaagaaacatttcctccggaagtggctgaagatgcccagcctg
catgacttggacatccgctctatcctcgattggagctattacatcgagaggttgggtagt
gcaatccaaaaaattatcaccatccctgcagcgctgcagcaagtgaagaatccagttccc
agagtgaggcatcctgactggctccacaagaaactcctggagaaaaacgacatctacaag
cagaagaaaatcagcgaactgttcaccagtgagggcaagagacagatttcccatcagccc
ctggaggctggccaagctgcagacatggaggactttggggcggcacctcgacccctgcag
cccgctatcctcatcagcaccaagaggaagcgggcctcgcaaggagaggacagccaggtg
gaatcccaagatgtggagctcacacagtcctggagggaaatcctgggacctccacctcca
atgggaaaaacgcgggaggagcgactggtgtggctgcgctatcacaagaaaaagtgggag
ttgcagctgaggcaaaggaaggagaagaagaagagaaggaagctgctggatggagaacca
caaccggtcggaggaggagtcattagaggtggccccagcaccgggctgggaagcttcctg
cgacggacagcgcgcagcatcctcgacatgccgtggcagattgtgcagattgcagagacc
aaccaccctggtctgtataagctgtgggctgtgattggaaacgatcttcactgcatgaag
ctcaacatccctcgcatcttctacgtcaaccagaaagtcccaaaacaggacgaaggagga
gttgcgtacaggaaggtgaaccgcatgctgcctcgctccaacattgtgtactacctgtat
gagtactcagtgccagaggacatgtatcagaaccacatcaatgagatcaacgctgacctc
tctgcaccggacattgaaggagtctacgaaacacaggtccccctgctgttccgtgcgctg
gtgcaactgggatgtgtgtgtatggtaaacaagcacattgtgagggatctggctggcagg
gagaccgactccttcgatctggagcatctggagatgagatctctggcccagttcagctac
ctggaacctggaagtgttcgccacatgtacctgtaccatcacagccaaggccagaaggct
ttgtttggcctcttcatcccctctcagcgcaaagccagcgtcttcattctggacacagtc
agaagtaaccagatgcccaacctgagtaatgtctacacggccgagcgcactgccctcctg
gagaagacgtcagaggagcttctgcctccagaaaaacacaccttcgaggttcgagctgaa
aatgacatcaaggctgtatcccgagctttgcagcgcatcttgctgaactacaaggacgag
cgtcggggacccaccctcattgctgtgcagtctaactgggagctgcagcgactggcagca
gggatgcctgtgcttgaggagttcccagtggttccagtacacgttgtggacgagatcaac
tacaacgtgctggactggcagcggcacggagcccggcgcatgatccgccattacctcaac
ctggacagctgcctgtcgcaggcttttgacatggccagatattaccaccttcctgtgggg
aaccttcctcaggatgtgtcgatcttcggctctgacttgttcctagcgagacatctgcgg
aaacacaaccacctgctgtggctttctcctacagcgagaccagacctgggaggaaaagag
gctgacgacagtcgtttggtcatggaaaacgatgagaagggttctgtggagataaactct
cagggatgttactctacagcatgtgtggagttggacttgcagagcctggcggtgaacacg
atcctccagtcgcagcacgtcaacgacatggagggcggagccagtctgggcgtcagtttt
gatgtgatccagcagttctcactggaggacatgatgtcaggaaaccagggagccagcgct
ctcgctagctacgacgagacggcgctctgctccaacaccttcaggatcttaaagagcatg
gtggtcgggtgggtgagggagatcacccagtaccacaacgtgtatgcagacaaccaggtg
atgcatttctaccgctggctgcgctctccgagttcgctgctctacgacccggcgctgcat
cgcaccctgcacaacatgatgaagaaggtgtttctgcagctggttgcagagttcaaacgt
ctggggtcaactgtggtgtacgggaacttcaacaggatcatcttgtgcacaaagaaacga
aggatagacgatgctatcggctatgtgggatatataaccaaaagcatacattcgagagaa
atcttccactctctgtccatcaccttctcacgttgttgggagttcctgttgtggatggac
ccgtctaactatggcggtgtgaagggaaaactgccttccagcgtcttgtatggagaggaa
ggagccaaacagaagaaaagaaaacaaggagaggaagatgaagagggcagtgaagatgaa
gacgaggatgatgctgaggaagatgatggcgatgcggagactgatgaggttgaggagctg
attgagagcaactggaatgtcatgcattatctcccccaaacagcttcctgtcagaaatac
ttcctcatgattgtgtctgcctacatagctgcagtttaccacagcatgaaagaggagctg
agacgtaatgctcctggagctacgccagtcaagaggcgcgcaggcagccaggcttcccag
caggcagtcggggacttgagtgcgcttcctggaatgatctccttctcccaggagtatgtg
gccagcgagctgacgcagaacattttcaccatcacccagaagatccagaaaaaggtgact
gggaccaggaatgcaacccagacctcagagatgtttcctgtcctgcccggctcacacctg
ccgctcaacaatccggcgctggagttcgtcaaatacgtctgtcaggtcctttcgcttgat
gccaacattgtgaatcaggtgaacaaactaaagagagacctgctgcgtctcgtggatgtc
ggagagttttcggaggaggcccagtttcgtgacccttgtaactcctacatactgccagaa
gtcatctgtcaccactgcaacttctgtcgggacctcgacctctgcaaggacccgactgtg
gcacaggatgggtcggtcttacctcaatggttctgctcaaattgccaaatgcaatatgaa
actgagtctattgagacggccctggtggatgctctgcagaagaaacttatgagctacact
ctgcaggatctggtctgcaccaaatgcaaaggggtgaaagaagccaacatgcccctttac
tgcgcgtgtgccggaaactttgacctgaccttctcagccaagagcttctccgagcagacc
gcagtgtttcgaaacatagcttcccactacaacatgcgattcctgggggagaccatcgac
tggctgcttgagatgagccctcagatcagccagagcaggcactga
DBGET
integrated database retrieval system
