Gambusia affinis (western mosquitofish): 122828688
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Entry
122828688 CDS
T07758
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gaf03036
]
122828688
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Meiosis-specific proteins
Others
122828688
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_ATPase
SHOC1_PDDEXK
SHOC1_HhH_tandem
DUF7742
SHOC1_2HhH
Motif
Other DBs
NCBI-GeneID:
122828688
NCBI-ProteinID:
XP_043968411
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All DBs
Position
LG03:22471343..22493097
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AA seq
1417 aa
AA seq
DB search
MCDKNASNELFSAVRFKALDYVFEASTTLKISINLLSLPAPYVTGTSDLYPHSGRLPDDT
YRKPWIRGKVISSCKLFVSGSVLDDLGQKNQPVNSLERFIVEKDVEIVPSSNPDSFDEDQ
FIFLLNKQINDSCQETFSKCRPDETSPETKCKDLFLSEDFIAPDLVAELKRHLPSLKAKL
SRLKTLPVSDPLLNSTGISISEDVMFSCFRRCESYKKPADAISDVACGDFQDQFLKLPLL
QTESLLLPPVVDSSQLKTQNFTTFSGVGGCVNISPEPVDEECSVLDLLRRTSLSKSPVEI
SQFDLQQKQIKEKRQSGKLIQSGCSAGTELDFILSPIPKKNRTHIRLSTSHLQEEKLSPF
TPTSFLSTRTKNEMKKTVWSSEKHLTSVLRFLLSEPALHEPASGFHPLREALGVIKLEKQ
SFSSAVDKLELRLETEKPEIILGKNLELIEKMTTEVPTNRQNEKEDFSRMIPEHEEVEFL
HVDSPNNANLLKQSPVGSSRFSSSKLIVGPNSRERSTTSTGPEETRSEPAAGSPAPLNIS
SGAADWFRSSGGSGCSLPSRSNAGDNQKSLIFTKHQPEKNLDPLSDFMTLRSQQLAAAGA
TTSISAVPEEEEVNQPEQQHHHHHSEEMKTTDRKPAYVSLAVMGDAVREQNPAAVRAGRI
DGRPVGDSDLKHYSRVIQVQPTESQRRVYCELLAVAQPCLSSARQLGLHFPSWGNFSCLS
PDQTNFLLKQQDRALSRTPAGSSELVRDQEQLFNLAALIHVLVTFKELLLKCDLSIAVEY
LTKAAETCEDHRLMQLRKRLQIILFLSHRKEEPDFKLLELQKLLAEILQTRKGSNSTEKI
LVILSVESHENSSKVISSLSRVTGAAVSSVCPDEEKKKLNGASVVSRVCGSDCVLVFEEN
IGPDFPWSCFSVLVEFDHPGPSRWSQICSDRSISRLSFITSLSDSDSEKICWRLEENVPF
VLLVTEGLLNYPLLLQTLESSFGVTVMERSHSLTLQKLGGIHNYTVITVDESTAIVIQEQ
DELGQDRASERLVMRLSALSLQYSCCWLILHCPDGRGGGFSSETFNNLVLVYSSLVLFGM
KSEELDVKVLIVSEVLEMAEFINRICFSSLMSKYGDPVSYLDRDWLTVSPSQEESCLSQF
PCVSPLVGQLMLSRAPSLQWLLGADLPQLSQLLPEVPQKVLKLFSDITSLYLSNTEPATP
QIKETNQQPFRTAQTFGAESGFMNLLHPEPNSSFLCDAMNPEDLFPNQNPESSNLKLDLN
GSFGSPVKDWTGPDPWKEEERLPAWRGRAGAAGRIVERVGDLWAPRDSPDISYLQTSNSP
VLLDSRFSSSHTSYSDLQHHHSAHFIFSQSPPTAAILDQSYHSVTSSGSFGSMFWSGQER
KRSGDAAGLVGSALKRGRLSYEKVPGRKDGQTRLKLF
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgataagaacgcctcaaatgaactcttctccgctgtccgatttaaagctcttgac
tacgtgtttgaggctagcaccactctgaagatctccataaacttactgtcgctaccagcg
ccgtatgtaactggaaccagtgacctttacccccacagtggcaggttacctgatgacacc
tacaggaagccatggatccgaggaaaggtgatttcttcctgcaaactctttgtcagtggt
tcagttcttgatgaccttggacagaaaaaccaacctgttaattcattggaaagatttatt
gtggaaaaggatgtggagatagttcccagctctaatcccgactcctttgatgaggatcaa
tttattttcctcctaaataagcagattaatgattcatgtcaggaaacgttttctaaatgc
agacctgacgagacgagtccagaaaccaaatgcaaagatcttttcctctctgaggacttc
attgctccagatttggtggcagagttaaaaagacatttaccgtctttgaaagccaaactg
tccaggctgaagacgcttcctgtgtccgacccgctgctgaactcaacaggaatcagcatc
tccgaggacgtcatgttcagctgcttcagacgatgtgagtcctacaagaaacctgcagac
gccatcagtgatgtcgcatgtggagattttcaggatcagtttcttaaacttcctctcttg
cagacagagtctctgctgttaccgcctgtagtcgacagttcccagcttaaaacacaaaac
ttcacgactttttctggagtcggtggttgtgtgaacatttctccagaaccagtagacgag
gaatgttctgtcctggatttacttcgtagaacttctctttcaaaatctccagtggaaatt
tcacagtttgatttacaacaaaaacaaataaaagaaaagagacagagtggaaaactgatc
caatcaggatgctcagctggaacagagctggactttattctgagcccgatccctaagaag
aaccgaacccacatccgactgtccacatctcatctccaggaagaaaaactttctcctttc
acaccaacatctttcctctcaacaagaaccaaaaatgagatgaagaaaacagtctggagc
tcagagaagcatctgacctctgtccttcgcttcctgttgtcagagcctgctttacatgaa
ccagcctctggttttcatcctctgcgtgaagcgttgggagttattaaactagaaaaacaa
agtttcagcagtgctgttgacaaactggaactacgtctggagacagaaaaaccagagata
attctgggtaaaaaccttgagctgattgaaaagatgacgacggaggttcctacaaacaga
cagaacgagaaggaggacttcagcagaatgatacctgaacatgaggaggttgaatttctc
catgtggattctccaaacaacgccaatctcctaaaacaaagccctgttggttcatcccgg
ttctcgtcctcaaaactcatcgtcggcccaaacagtcgggaacgaagcaccaccagcacc
ggtccagaggagacacgttcagaacccgctgccggttctcctgcgcccctcaacatcagc
agtggagcagctgattggtttaggagctccggcggttctgggtgctctctgccctccaga
tcaaacgccggagataatcagaagagtttgatcttcacgaaacatcaaccggagaagaac
ctggaccctctgtccgacttcatgacgctgaggtcacagcagctggctgcagctggtgca
actacaagcatctctgcagtaccagaagaagaagaggtgaaccaaccagagcagcagcat
catcatcatcattcggaagagatgaagacgactgacaggaagccagcgtacgtgagcctc
gctgtgatgggagacgcagtcagagagcagaacccggccgctgtgagggcgggtcggatc
gacggtcgtcctgtcggcgactcggacctcaaacattacagccgagtcattcaggttcag
ccaacagagagtcagcggcgagtttactgcgagctgctggccgtcgctcagccttgtctg
agttcggccaggcagctggggctccacttcccgtcatggggaaacttcagctgcttgtcc
ccagaccagacgaacttcctgctcaaacagcaggaccgggccctcagcaggaccccagca
gggagctccgaactggtcagagatcaggagcagctttttaacctggctgctctcatccat
gtgttggtgacgttcaaagagctgctgctgaagtgtgacctgagcattgctgtggagtac
ctgaccaaagcagctgagacgtgtgaggatcaccgcctgatgcagctgaggaagaggctg
cagatcatcctcttcctcagtcacaggaaggaagaacccgacttcaaactgctggagctg
cagaagcttctggctgaaatcctgcaaacgagaaaaggaagcaactctacagagaaaatt
ctcgtcattctctctgtggaatctcatgaaaacagttcaaaggtcatcagcagcttgagc
agagtaaccggagccgcagtgagttcagtttgtcccgatgaggagaagaagaaactaaac
ggcgcctctgtggtcagcagagtttgcggcagcgactgtgttttggtatttgaggagaac
atcggacccgactttccctggagctgcttctcagttttggtggagtttgaccatccgggt
ccgtcccgctggtcccagatctgcagcgaccgaagcatcagccgcctctccttcatcacc
agcctgtccgactccgactcagagaaaatctgttggcgtctggaagaaaacgtcccgttt
gtgttgctggtgactgaggggcttctgaattatcctctgctgctgcagacacttgagtcg
agcttcggtgtaactgtgatggagaggagccacagtctgactttgcagaaactcggagga
atccataactacaccgtgatcaccgtagacgaaagtacggctatcgtcattcaggagcag
gatgaactgggtcaggaccgagccagtgagaggctggtgatgaggctgagcgcgctctct
ctgcagtacagctgctgctggctcatcctgcactgccctgacggccggggcggagggttt
tcaagcgaaaccttcaacaacttggtgttggtttattcgtctctggttttgttcggcatg
aagtccgaggagctggatgtgaaggtgctgattgtgtcagaagtgttggaaatggccgag
tttatcaatcggatctgcttcagctccctgatgtccaaatatggagatcctgtgagctac
ctggacagagactggctgactgtcagcccctctcaggaggagtcgtgtctgtcccagttc
ccgtgtgtcagtcctctggtcggtcagctcatgctgagcagagctccctccctgcagtgg
ctcctgggggccgacctgcctcagctctcacagttacttcctgaagtcccacagaaagtc
cttaagctgttcagtgacatcacttccttgtacttgagcaacacagagccagcaacccct
cagattaaagagacaaaccaacaacccttcagaaccgctcagaccttcggcgccgagtcc
gggttcatgaaccttctgcatccagagcctaacagcagcttcctatgtgacgctatgaac
ccagaggacctgttccccaaccagaacccagagtcttcgaacttgaaactggacctgaac
ggttcctttgggagtccagttaaggactggaccggtccagatccctggaaggaagaggag
aggcttcctgcgtggagaggcagagctggagcggcagggagaatcgttgagcgagtcggt
gatctttgggccccaagagattcccccgatatttcgtaccttcagacatcaaacagcccg
gttctactggactctcggttcagttccagtcacacttcttacagtgacctccagcatcat
cacagcgctcacttcatcttcagtcagagccctcctacggcggccatcttggatcaaagc
tatcacagtgtgaccagcagcggttcttttggatccatgttctggagcggtcaggagagg
aagaggagcggagacgcagctggtctggttggatcagcgctgaagaggggaaggctgagc
tatgagaaggttcccggcagaaaggacggacagacgaggcttaaactgttttaa
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