Gambusia affinis (western mosquitofish): 122828721
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Entry
122828721 CDS
T07758
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122828721 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122828721 (lsm1)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122828721 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
122828721 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
122828721
NCBI-ProteinID:
XP_043968471
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Position
LG03:14968905..14973034
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AA seq
133 aa
AA seq
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MNYVPGTASLIDDIDKKHLVLLRDGRTLIGYLRSIDQFANLVFHQTVERIHVGKKFGDIP
RGIFIVRGENVVLLGEMDVDKPCDTILQQVSIEEILEEQRLQQQAKQETEKVKMQVLKDR
GLSIPKADNLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactatgtaccagggacggcaagcctcattgacgacatcgacaaaaagcacctggtg
ttgctccgagatggcagaactctgattggttacctcaggagcatcgaccagtttgccaat
ttagtgtttcaccagacggtggagcgcatccacgtggggaaaaagtttggagacatcccg
agaggaattttcatcgtgagaggggaaaatgtagttctgcttggagagatggacgtggat
aagccctgcgacaccatcctgcagcaggtttccatcgaagagatcctagaggagcagcgg
ctgcagcagcaagccaagcaggagacggagaaagtcaagatgcaggtcctgaaggatcga
ggcctctccattcccaaagcggataacttggacgaatattaa
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