Gambusia affinis (western mosquitofish): 122828927
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Entry
122828927 CDS
T07758
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122828927 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122828927 (patl1)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122828927 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
122828927 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
122828927
NCBI-ProteinID:
XP_043968928
LinkDB
All DBs
Position
LG04:complement(762283..772110)
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AA seq
796 aa
AA seq
DB search
MFRFQSLDDDCTLEEEDDGLIEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERDGL
GAGRQPGGGDSSPSPASSAAAGRLPPLCFSSSSCGPPGQDERSGGGDLAESLARFILDAD
PAIAGVGAAERRGPSAGPVLSAPRGPDQPRVLQQPASIPPKHQLPPGPPASGLPASSVLS
YQQQQHLLRRGAAPMGQMNSHSIWDNSMGFGPVSVTPGLVTHMEDSPLMSIIKEVGLPKR
PPQGRNDEGHDLSERAPPPRSSSPVIGSPPVRAVPIGTPPKHPMSLNHQVHHPTAVHVRA
PVQHRYPAPFPERLSPNTLLNMANSPLCRGPFPPRVGPVLSQLQRAQLLNSQVAGFPRGG
PGPPLLAGAGFRPFFGGPPPPHGHRMGPPPPHGPPNHTPPIRHNTTHLHPQHRRMLTQRM
QSRGGDRVRTGLDRRSRDPYSNLMSQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKME
KRQEKEQDSSRKEHATKLITPQVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTT
RSDDEEKREKQVWNKRRQVLYTVEKMFSLLLEVQDFEKRFVQTPEEDRDALLEQHRSNTE
QLSNSLQDGDWEDRVSDEQCVMIMSVRKGKRLVARLLPFLPAAQAAAVVMVIARNLPALA
KKDKQDQALCCLVEPVSAVIQSLSSSALTDLLQELQGGEGQLAAVLQNKFGVTLLFLILS
EGERMQSSDPNCQLMDDNRWTELVFSVTRELLGVPSSSLAPPLFTPPNLLSLFSRYVDRQ
RLELLQDKLQISASSR
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgacgactgtacgctggaggaagaggatgatgggctg
atcgaggaggaagatgagatcgatcagtttaatgacgacacgtttggagccggcgccatc
gatgacgactggcaggaggagcacaagcgcctggcggagctggatgagcgggacgggctg
ggcgccgggcggcagccggggggcggagactcctccccgagccccgcctcctccgccgcc
gcaggtcggctccctccgctctgcttctcctcgtcttcctgtgggccgccgggtcaagac
gagcggtcgggaggcggcgacctggccgagtctctggcccgcttcattctggacgccgac
ccggccatcgccggcgtcggagcggcagagaggcgcggtccgtcggccgggccggttctg
tcggccccgcggggcccggaccagcccagagtcctgcagcagcccgcctccatcccgccc
aaacaccagctgccccccgggccccccgcctcaggcctgcccgcctcctccgtgctcagc
taccagcagcagcagcacctcctgcgcagaggagccgctcccatgggccagatgaactct
cacagcatctgggacaacagcatgggcttcgggccggtcagcgtcacgccgggactcgtc
acacacatggaggacagtccactgatgtccatcatcaaggaggtggggcttccgaagcgc
cctcctcaggggaggaacgacgaaggtcacgacctgtcggagagggccccgccccctcgc
tcctcctctcctgtgattggctctcctccagtgagggcggtgcctatcgggacgccgccc
aaacacccgatgagcctgaaccatcaggtccaccaccccacggcggtccacgtgcgcgcc
ccggtccagcaccggtaccccgctccgttccctgagcgcctgtcccccaacacgctgctc
aacatggccaactctccgttgtgtcgcggtccgttccctcccagagtcggcccggttctg
tctcagctccaacgggctcagctgctcaactcccaggtggcaggttttcctcgcggcggc
cccggccctcccctgctagccggcgccgggttcaggcccttcttcgggggcccccctcct
cctcacggccacaggatgggccccccgccgccccacggcccccccaaccacacgccgccc
atcaggcacaacacgacgcacctccaccctcagcaccgccgcatgctgacgcagcgcatg
cagagccgcggcggcgaccgggtcagaaccgggctggaccgccgcagccgggacccgtac
agcaacctgatgagccagaaggagaaggagtgggtgaccaagatccagatgatgcagctg
cagagcaccgacccgtacctggacgactactactaccagaactactatgagaagatggag
aagcgtcaggagaaggagcaagacagcagcaggaaggagcacgccaccaagctcatcact
ccgcaggtggccaaggtggagcacacctaccggccagttcagtttgcaggatctctgggg
aagctgacggtgtccagcgtcaacaacccgaggaagatgatcgacgccgtggtaacgacc
cgctccgacgacgaggagaagagggagaagcaggtgtggaacaagaggcgccaagtgctg
tacaccgtggagaagatgttcagtttgctgctggaggtccaggactttgagaaacgcttc
gtccaaacgccagaggaggacagagacgctctgctggagcaacacaggagcaacacggag
caactgagcaactcgctgcaggacggggactgggaggacagggtgagcgatgagcagtgt
gtgatgatcatgtcggtgcggaaagggaagcggctcgtcgccaggctcctccccttcctg
cctgcggcgcaggctgctgccgttgtcatggtgatcgcacgcaacctccccgccttggcg
aagaaggacaagcaggaccaggcgttgtgctgcctggtggagccggtctctgcagtcatc
cagtctctgtccagctccgccctcacagacctgctgcaggagctgcagggcggcgagggc
cagctggccgccgtgctgcagaacaagttcggcgtgacgctgctgtttctgatcctgagt
gaaggagagcgcatgcagagctccgacccaaactgtcagctcatggacgacaatcgatgg
actgagttggtgttctcggtgaccagggagctgctcggcgtcccgtcttcatcgctggct
ccgcccctcttcacgcctcccaacctgctgtctctgttctcgcgctacgtggatcggcag
aggctggagctgctgcaggacaagctacagatctctgcttcatccaggtag
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